View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6291_low_24 (Length: 227)

Name: NF6291_low_24
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6291_low_24
NF6291_low_24
[»] chr5 (2 HSPs)
chr5 (1-209)||(15506003-15506211)
chr5 (48-98)||(35554388-35554438)
[»] chr3 (1 HSPs)
chr3 (56-94)||(13702363-13702401)
[»] chr7 (3 HSPs)
chr7 (63-98)||(32692626-32692661)
chr7 (56-93)||(32692749-32692786)
chr7 (61-98)||(37814838-37814875)
[»] chr4 (1 HSPs)
chr4 (182-210)||(37875873-37875901)
[»] chr2 (1 HSPs)
chr2 (182-210)||(23895780-23895808)


Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 15506003 - 15506211
Alignment:
Q  1 ctccctttggtagcaatagtacctcgccctatgtgtgaatgtgcaaagagcaatcatatttgaacatcaaaattttgacaatttatgtgacaacctatga 100  Q
    |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15506003 ctccctttggtagcaatagtacctcgccctgtgtgtgaatctgcaaagagcaatcatatttgaacatcaaaattttgacaatttatgtgacaatctatga 15506102  T
Q  101 atgttatgaatttattagtaattgtaattttgtatgcgtcgtagctgaacactgtgactttgttatttgacattctaagatatataaatttcctatttac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15506103 atgttatgaatttattagtaattgtaattttgtatgcgtcgtagctgaacactgtgactttgttatttgacattctaagatatataaatttcctatttac 15506202  T
Q  201 tctactatg 209  Q
    |||||||||    
T  15506203 tctactatg 15506211  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 35554388 - 35554438
Alignment:
Q  48 gagcaatcatatttgaacatcaaaattttgacaatttatgtgacaacctat 98  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  35554388 gagcaatgatatttgaacatcaaaatttcgacaatttatgtgacaatctat 35554438  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 13702401 - 13702363
Alignment:
Q  56 atatttgaacatcaaaattttgacaatttatgtgacaac 94  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  13702401 atatttgaacatcaaaattttgacaacttatgtgacaac 13702363  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 98
Target Start/End: Original strand, 32692626 - 32692661
Alignment:
Q  63 aacatcaaaattttgacaatttatgtgacaacctat 98  Q
    |||||||||||||||| |||||||||||||||||||    
T  32692626 aacatcaaaattttgataatttatgtgacaacctat 32692661  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 32692786 - 32692749
Alignment:
Q  56 atatttgaacatcaaaattttgacaatttatgtgacaa 93  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  32692786 atatttgaacattaaaattttgacaatttatatgacaa 32692749  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 98
Target Start/End: Complemental strand, 37814875 - 37814838
Alignment:
Q  61 tgaacatcaaaattttgacaatttatgtgacaacctat 98  Q
    |||||||||||||||||  |||||||||||||||||||    
T  37814875 tgaacatcaaaattttgctaatttatgtgacaacctat 37814838  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Original strand, 37875873 - 37875901
Alignment:
Q  182 atataaatttcctatttactctactatgt 210  Q
    |||||||||||||||||||||||||||||    
T  37875873 atataaatttcctatttactctactatgt 37875901  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 210
Target Start/End: Complemental strand, 23895808 - 23895780
Alignment:
Q  182 atataaatttcctatttactctactatgt 210  Q
    |||||||||||||||||||||||||||||    
T  23895808 atataaatttcctatttactctactatgt 23895780  T

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