View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6291_low_27 (Length: 217)
Name: NF6291_low_27
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 3e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 42182549 - 42182752
Alignment:
| Q |
1 |
atcataaatctctccattccaacacctgtcttctttacatgcctcaagcctagcctttgttgctgtactactatact---atatattatcatatcatatt |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
42182549 |
atcataaatctctccattccaacacctgtcttctttacatgcctcaagcctagcctttgttgctgtactactatactactatatattaccatatcatatg |
42182648 |
T |
|
| Q |
98 |
cattatcatttcattacccctactcctatttagaaacagcactatcttccttacctgaaaaagttaattttggtggttgattctttttactattggtata |
197 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
42182649 |
cattatcatttcattacccctactcctatttagaaacagcactatcttccttacctgaaaaagttaattttggtggttgattctttttactattggcata |
42182748 |
T |
|
| Q |
198 |
atat |
201 |
Q |
| |
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|||| |
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|
| T |
42182749 |
atat |
42182752 |
T |
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