View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6291_low_3 (Length: 492)
Name: NF6291_low_3
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 7e-84; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 10 - 194
Target Start/End: Complemental strand, 34483825 - 34483638
Alignment:
| Q |
10 |
attattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgttgcactac |
109 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34483825 |
attattcttaatgtggcacgaataacagagttcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgttgcactac |
34483726 |
T |
|
| Q |
110 |
ttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagcggcta---ttactgctttatgcatctc |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| |
|
|
| T |
34483725 |
ttatagatcctataagaatcgagcaatgcaagtagaagaagcaaaatcaattataataagtggctacttttactgttttatgcatctc |
34483638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 44 - 177
Target Start/End: Complemental strand, 34448427 - 34448294
Alignment:
| Q |
44 |
catacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgttgcactacttatagatcctataagaatcgagcaatgcaagta |
143 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||| | ||||||||||| ||||||| | | |||| |
|
|
| T |
34448427 |
catacgaaaactttgaggataaatacacaaaaccagaactgctaaaagattacattgttgcactacttgtggatcctataagcatcgagctaagtgagta |
34448328 |
T |
|
| Q |
144 |
gaagaagcaaaatcaattataataagcggctatt |
177 |
Q |
| |
|
|||||||||| |||| |||||||||| ||||||| |
|
|
| T |
34448327 |
gaagaagcaagatcagttataataagtggctatt |
34448294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 40 - 177
Target Start/End: Complemental strand, 34459664 - 34459527
Alignment:
| Q |
40 |
ttcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgttgcactacttatagatcctataagaatcgagcaatgca |
139 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| |||| ||| | ||||||||||||| |||||| ||| ||||||||||||| |||||||||||| |
|
|
| T |
34459664 |
ttcatatacgaagactttgaggataaatacacaaatccagatctgctcaaagattacattgctgcactgcttgtagatcctataagcatcgagcaatgcg |
34459565 |
T |
|
| Q |
140 |
agtagaagaagcaaaatcaattataataagcggctatt |
177 |
Q |
| |
|
|||||||||||||| |||| |||||||||| ||||||| |
|
|
| T |
34459564 |
agtagaagaagcaagatcagttataataagtggctatt |
34459527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 34473731 - 34473618
Alignment:
| Q |
12 |
tattcttagtgtggcacgaataacagaattcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgttgcactactt |
111 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||| |||||||||| ||||||||||||||||| | |||||| ||||||| || |||||||||| || |
|
|
| T |
34473731 |
tattcttaatgtggcacgaataaccgagttcacctacgaaaactacgaggataaatacacaaatggggaactgttgaaagactatgttgttgcacttctc |
34473632 |
T |
|
| Q |
112 |
atagatcctataag |
125 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
34473631 |
atagatccaataag |
34473618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 246 - 346
Target Start/End: Complemental strand, 34483384 - 34483283
Alignment:
| Q |
246 |
gccacagtttgaaatctaaattaccttcgtatcattaaatttgtcaatttata-tttccaggtacatatttaaattgatgacgacttgcttcatcaataa |
344 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||||||| | ||| |||||| |||||| ||| | ||| |||||||||||||||||||||| |
|
|
| T |
34483384 |
gccacagtttgaaatctaaattaccttcgcaccattacatttgtcagtacatattttccacgtacattttttatttgctgacgacttgcttcatcaataa |
34483285 |
T |
|
| Q |
345 |
tg |
346 |
Q |
| |
|
|| |
|
|
| T |
34483284 |
tg |
34483283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 435
Target Start/End: Complemental strand, 34459114 - 34459076
Alignment:
| Q |
397 |
ttaatcttttggatgagttcttttgttggtatttagtgt |
435 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
34459114 |
ttaatgttttggatgagttcttttgttgttatttagtgt |
34459076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 430
Target Start/End: Complemental strand, 34483258 - 34483178
Alignment:
| Q |
349 |
acattttaaacattactagcnnnnnnngtcgtcggtaataaaaagtggttaatcttttggatgagttcttttgttggtattt |
430 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
34483258 |
acattttaaacattactagctgaaaaagtcgtcattaatagaaagtgtcaaatcttttggatgagttc-tttgttggtattt |
34483178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 6132366 - 6132428
Alignment:
| Q |
40 |
ttcacatacgaaaactttgaggataaatacacaaaagcagaactgatgaaagattacattgtt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| || ||||||| ||||||||| |
|
|
| T |
6132366 |
ttcacatacgaaaactttgaggataaatacacaaatggggaattgctgaaagactacattgtt |
6132428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University