View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6291_low_4 (Length: 464)
Name: NF6291_low_4
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 401
Target Start/End: Original strand, 26146537 - 26146919
Alignment:
| Q |
17 |
ggataatcgagttgttttctggacttacattgtcgtgttccgagttgtttggtgtatatatgtttttggacacattcatcttacgacctaacttttgaaa |
116 |
Q |
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| T |
26146537 |
ggataatcgagttgttttttggacttacattgtcgtgttccgaattgttcggtgtatatatgattttggacacattcatcttacgacctaacttttgaaa |
26146636 |
T |
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| Q |
117 |
gtgtggtcaaaaactattaaacaacattgaggttttaaaaacaaatccaagatatgagatgggagttggtgtcgagtattcataaatagatnnnnnnntt |
216 |
Q |
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| T |
26146637 |
gtgtggtccaaaactattaaaaaacattgaggttttaaaaacaaatccaagatatgagatgggagttggtgtcgagtattcttaaatagatgaaaaaatt |
26146736 |
T |
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| Q |
217 |
agacgttaaacaatatatatgtaagaagaatcatatatctaatatcttagtctaatgttaatgtttttagtataatatggtcgatgattcactcagcgtt |
316 |
Q |
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| T |
26146737 |
agacgttaaaca--atatatgtgagaagaatcatatatctaatatcttagtctaatgttaatgttttgagtgcaatatggtcgatgattcactcagcgtt |
26146834 |
T |
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| Q |
317 |
ttcgactctccaaaagtctcaacaatgagttgtaacaacaaattcagcttcatcaagtgcacttattttattgacaaacatgtta |
401 |
Q |
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| T |
26146835 |
ttcgactctccaaaagtctcaacaatgagttgtaacaacaaattcagctgcatcaagtgcacttattttattgacaaacatgtta |
26146919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 26146948 - 26146990
Alignment:
| Q |
405 |
aatttgaactcctgacccacaaaataactctactagtgtcctt |
447 |
Q |
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| T |
26146948 |
aatttgaactcctgacccacaaaatagctcttctagtgtcctt |
26146990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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