View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6291_low_8 (Length: 365)
Name: NF6291_low_8
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 7969847 - 7970216
Alignment:
| Q |
1 |
tgtacttcaatcaagcatctattatagatgctacagcaccaaattcacttaaaacacttaagttggnnnnnnnntcattgaatctatcacacacaaaata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7969847 |
tgtacttcaatcaagcatctattatagatgctacagcaccaaattcacttaaaacacttaagttggaaaaataatcattgaatctatcacacacaaaata |
7969946 |
T |
|
| Q |
101 |
gaagcaatttccttcattgaatagaaactcagttatgtacattgaaattggaaaatagatagttcattggcagaa---------------------aata |
179 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||| |
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| T |
7969947 |
gaagcaatttccttcattgaatagaaactcagttatgtgcattgaaattggaaaatagatagttcattgccagaaaatagagaaaagcatagagaaaata |
7970046 |
T |
|
| Q |
180 |
gatatcatcattgtcaagggaagttgcaacttggttatgataacaaagttaggtgatcaagagtaaaactggtaggtcttggcatcaagtataatactcc |
279 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7970047 |
gatatcatcattgtcaagggaagttgcaacttggttatgataacaaagttaggtgatcaagagtaaaactggtaggtcttggcttcaagtataatactcc |
7970146 |
T |
|
| Q |
280 |
tcaatgctccaatgggtgctaaaatcattatacataccccaagaacaatacatatctgtaacatatggag |
349 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
7970147 |
tcaatgctccaatgggtgctaaaatcattatgcataccccaagaacaatacatatctgtaatatatggag |
7970216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 172 - 349
Target Start/End: Complemental strand, 8043670 - 8043493
Alignment:
| Q |
172 |
agaaaatagatatcatcattgtcaagggaagttgcaacttggttatgataacaaagttaggtgatcaagagtaaaactggtaggtcttggcatcaagtat |
271 |
Q |
| |
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||||||||||| ||||||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8043670 |
agaaaatagatttcatcattgtccagggaagttgtaacttcgttataataacaaagttaggtgatcaagagtaaaactggtaggtcttggcttcaagtat |
8043571 |
T |
|
| Q |
272 |
aatactcctcaatgctccaatgggtgctaaaatcattatacataccccaagaacaatacatatctgtaacatatggag |
349 |
Q |
| |
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||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8043570 |
aatactcctcaatgctccaatgggtgctagaaccattatacataccccaagaacaacacatatctgtaacatatggag |
8043493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 172 - 342
Target Start/End: Complemental strand, 8033734 - 8033564
Alignment:
| Q |
172 |
agaaaatagatatcatcattgtcaagggaagttgcaacttggttatgataacaaagttaggtgatcaagagtaaaactggtaggtcttggcatcaagtat |
271 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
8033734 |
agaaagtagatatcatcattgtcaagggaagttgtaacttggttatgataacaaagttaggtgatcaagagtaaaactggtaggtcttggcttcaagtat |
8033635 |
T |
|
| Q |
272 |
aatactcctcaatgctccaatgggtgctaaaatcattatacataccccaagaacaatacatatctgtaaca |
342 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
8033634 |
aatactcctcaatgctccaatgggtgccaaaatcattatacataagccaataacaatacttatctgtaaca |
8033564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 8033937 - 8033759
Alignment:
| Q |
1 |
tgtacttcaatcaagcatctattatagatgctacagcaccaaattcacttaaaacacttaagttggnnnnnnnntcattgaatctatcacacacaaaata |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8033937 |
tgtacttcaaccaagcatctattatagatgctacagcgccaaattcacataaaacacttaagttggaaaaaaaatcattgaatctatcacacacaaaata |
8033838 |
T |
|
| Q |
101 |
gaagcaatttccttcattgaatagaaactcagttatgtacattgaaattggaaaatagatagttcattggcagaaaata |
179 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8033837 |
gatgcaatttccttcattgaatagaaactcagttatgtacattgaaattggaaaatagatagttcattggcagaaaata |
8033759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 179
Target Start/End: Complemental strand, 8043750 - 8043695
Alignment:
| Q |
124 |
gaaactcagttatgtacattgaaattggaaaatagatagttcattggcagaaaata |
179 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
8043750 |
gaaactcaaatatgtacattgaaattgaaaaatagatagttcattggcagaaaata |
8043695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 340
Target Start/End: Original strand, 7976721 - 7976821
Alignment:
| Q |
240 |
gagtaaaactggtaggtcttggcatcaagtataatactcctcaatgctccaatgggtgctaaaatcattatacataccccaagaacaatacatatctgta |
339 |
Q |
| |
|
|||||||||| ||||||||| || | || ||| || |||||||| | ||||| || | ||||||||||| |||||| ||||| ||||| || ||||||| |
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| T |
7976721 |
gagtaaaacttgtaggtcttagccttaattatgattgtcctcaatccaccaataggagataaaatcattaaacatacgccaagcacaatgcagatctgta |
7976820 |
T |
|
| Q |
340 |
a |
340 |
Q |
| |
|
| |
|
|
| T |
7976821 |
a |
7976821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 41380543 - 41380654
Alignment:
| Q |
238 |
aagagtaaaactggtaggtcttggcatcaagtataatactcctcaatgctccaatgggtgctaaaatcattatacataccccaagaacaatacatatctg |
337 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
41380543 |
aagagtaaaactggtaggacttggcttcaaggataatactcctcaatgctccaatgggtgctagaatcattatacataccccaagaacaatacatatctg |
41380642 |
T |
|
| Q |
338 |
taacatatggag |
349 |
Q |
| |
|
||| |||||||| |
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|
| T |
41380643 |
taatatatggag |
41380654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 179
Target Start/End: Original strand, 41380443 - 41380498
Alignment:
| Q |
124 |
gaaactcagttatgtacattgaaattggaaaatagatagttcattggcagaaaata |
179 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
41380443 |
gaaactcaattatgtacattgaaattggaaaatagatagtttattggcagcaaata |
41380498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41380276 - 41380308
Alignment:
| Q |
1 |
tgtacttcaatcaagcatctattatagatgcta |
33 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
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|
| T |
41380276 |
tgtacttcattcaagcatctattatagatgcta |
41380308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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