View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6291_low_9 (Length: 354)
Name: NF6291_low_9
Description: NF6291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6291_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 139 - 335
Target Start/End: Complemental strand, 36478895 - 36478699
Alignment:
| Q |
139 |
gtgattaataatcgaaggcattgatacctcgtgagaaggaagttctggtgcggcggaaagaagagtatgagaatgagagaaaataagattatgaagcatt |
238 |
Q |
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| T |
36478895 |
gtgattaataatcgaaggcattgatacctcgtgagaaggaagttctggtgcggcggaaagaagagtatgagaatgagagaaaataagattatgaagcatt |
36478796 |
T |
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| Q |
239 |
tgagaagtggaattacgaggaggattcgttagggattcatctctcagtgtcagaaacgcggttctccacgatctgatcaacggcgtcggtgccattg |
335 |
Q |
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| T |
36478795 |
tgagaagtggaattacgaggaggattcgttagggattcatctctcagtgtcagaaacgcggttctccacgatctgatcaacggcgtcggtgccattg |
36478699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 56
Target Start/End: Complemental strand, 36479019 - 36478978
Alignment:
| Q |
15 |
atcatcttcatctgaagaactagatgcaaccaattccatcat |
56 |
Q |
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| T |
36479019 |
atcatcttcatctgaagaactagatgcaaccaattccatcat |
36478978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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