View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6292_low_1 (Length: 354)
Name: NF6292_low_1
Description: NF6292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6292_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 2875984 - 2876218
Alignment:
| Q |
18 |
acaattaagttaattcttgtgtgactctatttattttttattgagaaatgaataattatattctaaaacacgtaatctgaattcctatttttgtgcattt |
117 |
Q |
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| T |
2875984 |
acaattaagttaattcttgtgtggctctatttattttttattgagaaatgaataattatattctaaaacacgtaatctgaattcctatttttgtgcattt |
2876083 |
T |
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| Q |
118 |
tgaaaggaagcaattagattttcctctattctaagaacaaatattttttgaattacccatgcttgaatctcttgattggaacaatttgtaagtaaggtct |
217 |
Q |
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| T |
2876084 |
tgaaaggaagcaattagattttcctctattctaagaacaaatattttttgaattacccatgcttgaatctcttgattggaacaatttgtaagtaaggtct |
2876183 |
T |
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| Q |
218 |
ttcttacttttcggtcgaactctaaattaacaaag |
252 |
Q |
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| T |
2876184 |
ttcttacttttcggtcgaactctaaattaacaaag |
2876218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 279 - 343
Target Start/End: Original strand, 2876218 - 2876282
Alignment:
| Q |
279 |
ggttaagacaaaaaataaattgttgacgagggattagcacaaatttaatgcatcaatgtgcctat |
343 |
Q |
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| T |
2876218 |
ggttaagacaaaaaataaattgttgacgagggattagcacaaatttaatgcatcaatgtgcctat |
2876282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 2847137 - 2847186
Alignment:
| Q |
82 |
aaaacacgtaatctgaattcctatttttgtgcattttgaaaggaagcaat |
131 |
Q |
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| T |
2847137 |
aaaacacataatttgatttcctatttttgtacattttggaaggaagcaat |
2847186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 2858974 - 2859023
Alignment:
| Q |
82 |
aaaacacgtaatctgaattcctatttttgtgcattttgaaaggaagcaat |
131 |
Q |
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| T |
2858974 |
aaaacacataatttgatttcctatttttgtacattttggaaggaagcaat |
2859023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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