View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6293_high_1 (Length: 517)
Name: NF6293_high_1
Description: NF6293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6293_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 17 - 507
Target Start/End: Original strand, 6011783 - 6012273
Alignment:
| Q |
17 |
acaaagaagaaagaatagctagaacctggggaacaactgctccaggattgccttatgttgaggaggtcattgctccagctggaaattggcttattggagg |
116 |
Q |
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| T |
6011783 |
acaaagaagaaagaatagctagaacctggggaacaactgctccaggattgccttatgttgaggaggtcattgctccagctggaaattggcttattggagg |
6011882 |
T |
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| Q |
117 |
agatttggaagtgctaaaacctatcaaatacaatgatggtcttgataactacaggctatctcccaagcaacttcgggaagaatttgataggcgtaaagct |
216 |
Q |
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| T |
6011883 |
agatttggaagtgctaaaacctatcaaatacaatgatggtcttgataactacaggctatctcccaagcaacttcgggaagaatttgataggcgtaaagct |
6011982 |
T |
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| Q |
217 |
gatgcagttttcgcctttcagttaagaaatcctgtgcataacggtcatgccttgttaatgaacgatactcgtcaacgcctactagacatgggttacaaaa |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6011983 |
gatgcagttttcgcctttcagttaagaaatcctgtgcataacggtcatgccttgttaatgaacgatactcgtcaacgtctactagacatgggttacaaaa |
6012082 |
T |
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| Q |
317 |
atccgattttattgcttcatcctcttggaggtttcacaaaggttgacgatgttcccttagatgtcaggatggagcaacatagcaaggtaatttccatcat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6012083 |
atccgattttattgcttcatcctcttggaggtttcacaaaggttgacgatgttcccttagatgtcaggatggagcaacatagcaaggtaatttccatcat |
6012182 |
T |
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| Q |
417 |
tttttctcatatggcgtcgagtaagaatcaattttgtttaatatcggtgctatagagtagcggtttttgaacacatcgctattgctctgtg |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6012183 |
tttttctcatatggcgtcgagtaagaatcaattttgtttaatatcggtgctatagagtagcggtttttgaacacatcgctattgctctgtg |
6012273 |
T |
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