View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6293_low_10 (Length: 243)
Name: NF6293_low_10
Description: NF6293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6293_low_10 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 5768476 - 5768240
Alignment:
| Q |
7 |
tccaaaaatatctacagaatatagaggtcaatgaattagttcaatgcggacaatgatgtccgcgatttcaaatgtccattttacgagtcatagtataaga |
106 |
Q |
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| T |
5768476 |
tccataaatatctacagaatatagtggtcaatgaattagttcaattcggacaatgatgtccgcgatttcaaatgtccattttacaagtcatagtataaga |
5768377 |
T |
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| Q |
107 |
aatcatccgagtatgtatgacacaagaatggtaatcgatgaaagtaattaaaggcaaagcaatgaaagacaatacaggttaaaacttgcattaaacaata |
206 |
Q |
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| T |
5768376 |
aatcatccgagtatgtatgacacaagaatggtaatcgatgaaagtaattaaaggcaaagcaatgaaagacaatacaggttaaaacttgcattacacaata |
5768277 |
T |
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| Q |
207 |
acttaagcaattatcatacgaagagtgatgagcatct |
243 |
Q |
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| T |
5768276 |
acttaagcaattatcatgcgaagagtgatgagcatct |
5768240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 14002454 - 14002597
Alignment:
| Q |
100 |
tataagaaatcatccgagtatgtatgacacaagaatggtaatcgatgaaagtaattaaaggcaaagcaatgaaagacaatacaggttaaaacttgcatta |
199 |
Q |
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| T |
14002454 |
tataagaaattatccgagtatgtatgacacaagaatggtaatcgatgaaagtaattaaaggcaaagcaatgaaagacaatacaggttaaaacttgcatta |
14002553 |
T |
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| Q |
200 |
aacaataacttaagcaattatcatacgaagagtgatgagcatct |
243 |
Q |
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| T |
14002554 |
cacaataacttaagcaattatcatgcgaagagtgatgagcatct |
14002597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 129
Target Start/End: Original strand, 14002347 - 14002453
Alignment:
| Q |
23 |
gaatatagaggtcaatgaattagttcaatgcggacaatgatgtccgcgatttcaaatgtccattttacgagtcatagtataagaaatcatccgagtatgt |
122 |
Q |
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| T |
14002347 |
gaatatagtggtcaatgaattagttcaattcggacaatgatgtccgcgatttcaaatgtccattttacgagtcatagtataagaaatcatccgagtatgt |
14002446 |
T |
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| Q |
123 |
atgacac |
129 |
Q |
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| T |
14002447 |
atgacac |
14002453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 8446556 - 8446485
Alignment:
| Q |
152 |
aattaaaggcaaagcaatgaaagacaatacaggttaaaacttgcattaaacaataacttaagcaattatcat |
223 |
Q |
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| T |
8446556 |
aatttaaggtaaagcaatgaaaagcaaaacaagttaaaacttgcgttacacaaaaacttaagcaattatcat |
8446485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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