View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6293_low_16 (Length: 221)
Name: NF6293_low_16
Description: NF6293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6293_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 39242980 - 39243183
Alignment:
| Q |
1 |
gtaatatataggatgtacaatacctaattatattttatctgtctgatatgcacttatacgccttcatgaggcacccgtgtatctaaattcgaaagaaggg |
100 |
Q |
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| T |
39242980 |
gtaatatataggatgtacaatacctaattatattttatctgtctgatatgcacttatacgccttcatgaggcacccgtgtatctaaattcgaaagaaggg |
39243079 |
T |
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| Q |
101 |
tagcctgtcctggccatttctcatgcttagtttataaccagctctagtgcaaagctaacatcctacttacataagaacattagcttaaggccttgtgaaa |
200 |
Q |
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| T |
39243080 |
tagcctgtcctggccatttctcatgcttagtttataaccagctctagtgcaaagctaacatcctacttacataagaacattagcttaaggccttgtgaaa |
39243179 |
T |
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| Q |
201 |
gtaa |
204 |
Q |
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|||| |
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| T |
39243180 |
gtaa |
39243183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 43038088 - 43037996
Alignment:
| Q |
79 |
gtatctaaattcgaaagaagggtagcctgtcctggccatttctcatgcttagtttataaccagctctagtgcaaagctaacatcctacttacataa |
174 |
Q |
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| T |
43038088 |
gtatctaaattctgaagaatggtagcatgtcctggccatttctcatgtttagtttataaccacctctagtgcaaa---aacatcctactcacataa |
43037996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 45985907 - 45986068
Alignment:
| Q |
30 |
atattttatctgtctgatatgcacttatacgccttcatgaggcacccgtgtatctaaattcgaaagaagggtagcctgtcctggccatttctcatgctta |
129 |
Q |
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| T |
45985907 |
atattttatctttcttatatgcacttatatgcctagatgagg-acttgtgaatctaaattttaaagaaagacaggctatcctgatcgtttctcatgttta |
45986005 |
T |
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| Q |
130 |
gtttataaccagctctagtgcaaagctaacatcctacttacataa-gaacattagcttaaggc |
191 |
Q |
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||| ||||||||||||||||||| |||||||||||||| |||||| | ||||||||| ||||| |
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| T |
45986006 |
gttaataaccagctctagtgcaacgctaacatcctactcacataaggcacattagctaaaggc |
45986068 |
T |
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