View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6293_low_3 (Length: 450)
Name: NF6293_low_3
Description: NF6293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6293_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 11 - 443
Target Start/End: Original strand, 18784727 - 18785159
Alignment:
| Q |
11 |
atgaaaacagataggggagaaacatggtgcttatgtgaagctatcaagagttgaaaaattcgttcttatggttggtacatatgaagaaaaaatcttcaac |
110 |
Q |
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| T |
18784727 |
atgaaaacagataggggagaaacatggtgcttatgtgaagctatcaagagttgaaaaattcgttcttatggttggtacatatgaagaaaaaatcttcagc |
18784826 |
T |
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| Q |
111 |
aaaagaactgcaattagagacaagaagttgaggaggcttattagtgataatgagaattcggtaagttcatgcatattttatttgaaaaaatgtaaataca |
210 |
Q |
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| T |
18784827 |
aaaagaactgcaattagagacaagaagttgaggaggcttattagtgataatgagaattcggtaagttcatgcatattttatttgaaaaaatgtaaataca |
18784926 |
T |
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| Q |
211 |
ttaattatgcattcattgacttattcgattccctttttgttgttccagaagcaagaagaacttaattcacatgattacatggattttgataatgaaaata |
310 |
Q |
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| T |
18784927 |
ttaactatgcattcattgacttattcgattccctttttgttgttccagaagcaagaagaacttaattcacatgattgcatggattttgacaatgaaaata |
18785026 |
T |
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| Q |
311 |
gttcaaattgcgctcttcgaattaaaaaggctgaagcttccgacaatgtttgtccacagtctgatgaagaagtaagtacttatattttttgatgttttcc |
410 |
Q |
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| T |
18785027 |
gttcaaattgcgctcttcgaattaaaaaggctgaagcttccgacaatgtttgtccacagtctgatgaagaagtaagtacttatattttttgatgttttcc |
18785126 |
T |
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| Q |
411 |
acactagaatgtagtattggagtttgatgatgt |
443 |
Q |
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| T |
18785127 |
acactagaatgtagtattggagtttgatgatgt |
18785159 |
T |
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