View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6293_low_5 (Length: 385)
Name: NF6293_low_5
Description: NF6293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6293_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 301
Target Start/End: Original strand, 48065446 - 48065736
Alignment:
| Q |
11 |
cagagaaagaatgcaaagagttattagcactcggagaagataaagatgaccaataccaaaagcctaaggtggtaccaacaaccacagccccagaagttat |
110 |
Q |
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| T |
48065446 |
cagagaaagaatgcaaagagttattagcactcggagaagataaagatgaccaataccaaaagcctaaggtggtaccaacaaccacagccccagaagttat |
48065545 |
T |
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| Q |
111 |
tgtcctaagaaaatactcaaaatctctaaccctttcatcaccaccatttccggacccatcaaaagagctcaacggagaagaagacgaagacgtggagcgt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48065546 |
tgtcctaagaaaatactcaaaatctctaaccctttcatcaccaccatttccggacccatcaaaagagctcaacggagaagaagacgatgacgtggagcgt |
48065645 |
T |
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| Q |
211 |
tgtgattggctacacaacggccttatgttatgtcgtagagtctgttggaatcttcttccccaagaaaacaacatgctaaggtcgagtttag |
301 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48065646 |
tgtgattggctacacaacggccttatgttatatcgtagagtctgttggaatcttcttccccaagaaaacaacatgctaaggtcgagtttag |
48065736 |
T |
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