View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6293_low_7 (Length: 357)
Name: NF6293_low_7
Description: NF6293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6293_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 8881219 - 8881557
Alignment:
| Q |
1 |
tacactgtgaaatttgtgatttgtttcaatttttaaatttaaattggtttggtttatcattcaacaccacttatgggtattttatttaacatttctcaat |
100 |
Q |
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| T |
8881219 |
tacactgttaaatttgtgatttgtttcaatttttaaatttaaattggtttggtttatcattcaacaccacttatgggtattttatttaacaattctcaat |
8881318 |
T |
|
| Q |
101 |
tccaaaagtggatcaaaagacactaaacaataaaatgcaaattaaatttaagcagtatatgattttattttattttggaatgggtgagcatgcag----n |
196 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8881319 |
tccaaaagtggatcaaaagacactaaacaataaaatgtaaattaaatttaagcagtatatgattttattttattttgaaatgggtgagcatgcagtatat |
8881418 |
T |
|
| Q |
197 |
nnnnnnnnnnnngcttctgagcttcacaacttatatactacatgatggcatgttttttatgagaaacaaataaagtacaatttaatgtagtaataatatt |
296 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8881419 |
atatatatatatgcttctgagcttcacaacttatatagtacatgatggcatgttttttatgagaaacaaataaagtacaatttaatgtagtaataatatt |
8881518 |
T |
|
| Q |
297 |
tcaattgannnnnnngttcagctcaagtaagtaacccag |
335 |
Q |
| |
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|||||||| |||||||||||||||||||||||| |
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| T |
8881519 |
tcaattgatttttttgttcagctcaagtaagtaacccag |
8881557 |
T |
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