View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6294_high_2 (Length: 590)
Name: NF6294_high_2
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 34785605 - 34785019
Alignment:
| Q |
1 |
atttggaaccattcctgttgtaaggttcagcttcattgctattatactatatattattccaatcatcatactcacaaacaatcctctcactgttatgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34785605 |
atttggaaccattcctgttgtaaggttcagcttcattgctattatactatatattattccaatcatcatactcacaaacaatcctctcactgttatgtgt |
34785506 |
T |
|
| Q |
101 |
tctgtccaatgttcatcggattggattacttcagctcctataactggcaacctttcttccatattctgattaatatctctttcaatttccannnnnnnct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34785505 |
tctgtccaatgttcatcggattggattacttcagctcctataactggcaacctttcttccatattctgattaatatctctttcaatttccatttttttct |
34785406 |
T |
|
| Q |
201 |
caccaaattccatgttgatgtttagtggacttgatggagaaatcatctttataacttactgcacctgtcacaactttactat----attaataatatata |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34785405 |
caccaaattccatgttgatgtttagtggacttgatggagaaatcatctttataacttactgcacctgtcacaactttactatattaattaataatatata |
34785306 |
T |
|
| Q |
297 |
gttgatacatcaagacaaaggtagatgaaaaacaatgattaaattat--atatattgt-------atataattatagcaactgaccttagtttatttgtt |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34785305 |
gttgatacatcaagacaaaggtagatgaaaaacaatgattaaattataaatatattgttatagtattataattatagcaactgaccttagtttatttgtt |
34785206 |
T |
|
| Q |
388 |
ctttctcttctagtctttttgtaactgatgaagcaatgaagacattaagatgctttcttccagcaaaggcgcggatacggtatggacttattatatagtg |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34785205 |
ctttctcttctagtctttttgtaactgatgaagcaatgaagacattaagatgctttcttccagcaaaggcgcggatacggtatggacttattatatagtg |
34785106 |
T |
|
| Q |
488 |
tggggtacatatatagatagatagatatgtcttaaggactagctgtaataatatataatgtaatacaagaatataaatgtcgattct |
574 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34785105 |
tggggtacatatatagatagatagatatgtcttaaggactagctgtaataatatataatgtaatacaagaatataaatgtcgattct |
34785019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University