View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_high_23 (Length: 250)
Name: NF6294_high_23
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_high_23 |
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| [»] scaffold0640 (2 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: scaffold0640 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 2106 - 2326
Alignment:
| Q |
19 |
gatgcaacagccaaatcctgtcgactcctgcccacgaaaaaactggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2106 |
gatgcaacagccaaatcctgtcgactcctgcccacgaaaaaactggcacggacactgcattggaattgtcagtgttgagcaacctgtccgctgctacttc |
2205 |
T |
|
| Q |
119 |
tgctgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaacacaattcagaatctgacttgcatttaatattt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2206 |
tgctgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaacacaattcagaatctgacttgcatttaatattt |
2305 |
T |
|
| Q |
219 |
tctggctccaaatccattcat |
239 |
Q |
| |
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||||||||||||||||||||| |
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| T |
2306 |
tctggctccaaatccattcat |
2326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 8749 - 8970
Alignment:
| Q |
17 |
cagatgcaacagccaaatcctgtcgactcctgcccacgaaaa-aactggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctac |
115 |
Q |
| |
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|||||| |||| ||||||| ||| |||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8749 |
cagatgtaacaaccaaatcttgttcgctcctgcccatgaaaaaaactggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctac |
8848 |
T |
|
| Q |
116 |
ttctgctgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaacac--aattcagaatctgacttgc-attta |
212 |
Q |
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||||| ||| |||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||| || ||||||||||||||| ||| ||| | |
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| T |
8849 |
ttctgagacttttaactatgtcatttcgagccaagtttcaaacctccttacattcagcttgcagcaaaaatactaaattcagaatctgacatgcaattga |
8948 |
T |
|
| Q |
213 |
atattttctggctccaaatcca |
234 |
Q |
| |
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| |||||||||| |||||||| |
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| T |
8949 |
tttttttctggcttcaaatcca |
8970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 22593 - 22814
Alignment:
| Q |
19 |
gatgcaacagccaaatcctgtcgactcctgcccacgaaaaaactggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttc |
118 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
22593 |
gatgcaacagccaaatcatgtcgactcctgcccacgaaaaaactggcacggacactgcattgaaactgtcagtgttgagcaacctgtccggtgctacttc |
22692 |
T |
|
| Q |
119 |
tgctgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcag-aaaaaacacaattcagaatctgacttgcatttaatatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
22693 |
tgctgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaaaaacaattcagaatctgacttgcatttaatatt |
22792 |
T |
|
| Q |
218 |
ttctggctccaaatccattcat |
239 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
22793 |
ttctggctccaaatccattcat |
22814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 41408862 - 41408641
Alignment:
| Q |
19 |
gatgcaacagccaaatcctgtcgactcctgcccacgaaaaaactggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctacttc |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
41408862 |
gatgcaacagccaaatcatgtcgactcctgcccacgaaaaaactggcacggacactgcattgaaactgtcagtgttgagcaacctgtccggtgctacttc |
41408763 |
T |
|
| Q |
119 |
tgctgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaa-aaaacacaattcagaatctgacttgcatttaatatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
41408762 |
tgctgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaaaaacaattcagaatctgacttgcatttaatatt |
41408663 |
T |
|
| Q |
218 |
ttctggctccaaatccattcat |
239 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
41408662 |
ttctggctccaaatccattcat |
41408641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 211
Target Start/End: Complemental strand, 41193758 - 41193563
Alignment:
| Q |
19 |
gatgcaacagccaaatcctgtcgactcctgcccacgaaaaaa-ctggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctactt |
117 |
Q |
| |
|
||||||||| |||||||||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41193758 |
gatgcaacaaacaaatcctgttcgctcctgcccatgaaaaaaactggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctactt |
41193659 |
T |
|
| Q |
118 |
ctgctgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaacac--aattcagaatctgacttgcattt |
211 |
Q |
| |
|
||| ||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||| || ||||||||||||||| ||||||| |
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| T |
41193658 |
ctgagacttttaactatgtcatttcgagccaagtttcaaacctccttccattcagcttgcagcaaaaatactaaattcagaatctgacatgcattt |
41193563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 1042688 - 1042462
Alignment:
| Q |
17 |
cagatgcaacagccaaatcctgtcgactcctgcccacgaaaaaa-ctggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctac |
115 |
Q |
| |
|
|||||| |||| ||||||| ||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042688 |
cagatgtaacaaccaaatcttgttcgctcctgcccatgaaaaaaactggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctac |
1042589 |
T |
|
| Q |
116 |
ttctgctgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaacac--aattcagaatctgacttgc-attta |
212 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||| || ||||||||||||||| ||| ||| | |
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|
| T |
1042588 |
ttctgagacttttaactatgtcatttcgagccaagtttcaaacctccttacattcagcttgcagcaaaaatactaaattcagaatctgacatgcaattga |
1042489 |
T |
|
| Q |
213 |
atattttctggctccaaatccattcat |
239 |
Q |
| |
|
| |||||||||| |||||||| |||| |
|
|
| T |
1042488 |
tttttttctggcttcaaatccactcat |
1042462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 33324279 - 33324053
Alignment:
| Q |
17 |
cagatgcaacagccaaatcctgtcgactcctgcccacgaaaaaa-ctggcacggacactgcattggaactgtcagtgttgagcaacctgtccgctgctac |
115 |
Q |
| |
|
|||||| |||| ||||||| ||| |||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33324279 |
cagatgtaacaaccaaatcttgttcgctcctgcccatgaaaaaaactggcaccgacactgcattggaactgtcagtgttgagcaacctgtccgctgctac |
33324180 |
T |
|
| Q |
116 |
ttctgctgcttctaactatgtcatttcgagccaaatttcggacctccttccattcagcttgcagaaaaaacac--aattcagaatctgacttgc-attta |
212 |
Q |
| |
|
||||| ||| |||||||||||||||||||||| |||| |||||||| |||||||||||||| ||||| || ||||||||||||||| ||| ||| | |
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|
| T |
33324179 |
ttctgagacttttaactatgtcatttcgagccaagtttcaaacctccttacattcagcttgcagcaaaaatactaaattcagaatctgacatgcaattga |
33324080 |
T |
|
| Q |
213 |
atattttctggctccaaatccattcat |
239 |
Q |
| |
|
| |||||||||| |||||||| |||| |
|
|
| T |
33324079 |
tttttttctggcttcaaatccactcat |
33324053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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