View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_high_24 (Length: 246)
Name: NF6294_high_24
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 8754239 - 8754023
Alignment:
| Q |
12 |
atgaatgtgacttgtggaatatttcatgtgtcttcacttcaaatttgttgaacttgcgtttatggctgggttttgaagccaaggaaaaatcaacacctcg |
111 |
Q |
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| T |
8754239 |
atgaatgtgacttgtggaatatttgatgtgtcttcacttaaaatttgttaaacttgcgtttatggctgggttttgaagccaaggaaaaatcaacacctcg |
8754140 |
T |
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| Q |
112 |
atgaatggagctaattagaataagtacttaagatcacccttaaaaatttcaaagtactcagaaactatagagaaataattgtgcaaatccaataggagaa |
211 |
Q |
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| T |
8754139 |
atgaatggagctaattagaataagtacttaagatcacccttaaaaatttcaaagtactcagaaacaatagagaaataattgtgcaaatccaataggagaa |
8754040 |
T |
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| Q |
212 |
ttgtttagagtgtcaga |
228 |
Q |
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| T |
8754039 |
ttgtttagagtgtcaga |
8754023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 8744955 - 8744765
Alignment:
| Q |
43 |
cttcacttcaaatttgttgaacttgcgtttatggctgggttttgaagccaaggaaaaatcaacacctcgatgaatggagctaattagaataagtac---- |
138 |
Q |
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| T |
8744955 |
cttcacttcaaatttgtcaaacttgcgtttatggctaggttttgaaaccaagaaaaaatcaacaccatgatgaatgatgctaattacaataagaactaaa |
8744856 |
T |
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| Q |
139 |
------ttaagatcacccttaaaaatttcaaagtactcagaaactatagagaaataattgtgcaaatccaataggagaattgtttagagtg |
223 |
Q |
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| T |
8744855 |
cccatttcaagatcacccttaacaatttcaaaatactcataaagaattgagaaataattgtacaaatctaataggaaaattgttaagagtg |
8744765 |
T |
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