View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_high_28 (Length: 238)
Name: NF6294_high_28
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_high_28 |
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Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 11051009 - 11051111
Alignment:
| Q |
77 |
gacaactaatatttataaaacaaataggatcatttataataaaaccaaaatatgagatattttctaagggcttatcgaaactatctaccaccaatccagt |
176 |
Q |
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| T |
11051009 |
gacaactaatatttataaaacaaataggatcatttataataaaaccaaaatatgagatatcttctaagggcttatcgaaactatctaccaccaatccagt |
11051108 |
T |
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| Q |
177 |
tca |
179 |
Q |
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||| |
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| T |
11051109 |
tca |
11051111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 11019851 - 11019952
Alignment:
| Q |
78 |
acaactaatatttataaaacaaataggatcatttataataaaaccaaaatatgagatattttctaagggcttatcgaaactatctaccaccaatccagtt |
177 |
Q |
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| T |
11019851 |
acaactagcatttgtaaaacaaataggatctttcataatgaaaccaaaatatgagatatcttctaagggcttatcgaaactatctaccaccaatccagtt |
11019950 |
T |
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| Q |
178 |
ca |
179 |
Q |
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|| |
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| T |
11019951 |
ca |
11019952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 11050885 - 11050925
Alignment:
| Q |
2 |
caaaggtttcttcgttacaatcatacaacgagaaatattta |
42 |
Q |
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| T |
11050885 |
caaaggtttcttcgttacaatcatacaacgagaaatattta |
11050925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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