View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_low_11 (Length: 378)
Name: NF6294_low_11
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 39385442 - 39385141
Alignment:
| Q |
30 |
acaccccgttctgctattgcttgatgttgatataaataatgacaccaagcaagcattgctgcattg--------------------tttgttccctttga |
109 |
Q |
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| T |
39385442 |
acaccccgttctgctattgcttgatgttgatataaataatgacaccaagcaagaattgctgcattggcatcaaagttacaaatttatttgttccctttga |
39385343 |
T |
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| Q |
110 |
ccaagaatattctctgtattgttttagtttattatagctattgatttgattcgtactaattaaattaataacatcattcatctcttgttttgtatggctg |
209 |
Q |
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| T |
39385342 |
ccaagaatattctctgtattgttttagtttattatagctattgatttgattcgtactaattaaattaataacatcattcttctcttgttttg-atggctg |
39385244 |
T |
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| Q |
210 |
gccacaactattgcaactgaagcagatttacacctgtcttctttatgtgctgccctgaaagagacctccactgcattaatcattagcacacggctaagcc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39385243 |
gccacaactattgcaactgaagcagatttacacctgtcttctttatgtgctgccctgaaagagacctccactgcattaatcattagcacacggctaagcc |
39385144 |
T |
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| Q |
310 |
ttc |
312 |
Q |
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||| |
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| T |
39385143 |
ttc |
39385141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 318 - 367
Target Start/End: Complemental strand, 39384711 - 39384662
Alignment:
| Q |
318 |
ttttctatattaagcaatatccccattactagcactaattttattttcat |
367 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39384711 |
ttttatatattaagcaatgtccccattactagcactaattttattttcat |
39384662 |
T |
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