View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_low_12 (Length: 357)
Name: NF6294_low_12
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 340
Target Start/End: Original strand, 21179433 - 21179760
Alignment:
| Q |
13 |
aatatagtagcatggacataacaagtttttcaaattactcaaacaagtaagttattttaattttcaaaactagtgaagtcactctaaactcatcttgctt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21179433 |
aatatagtagcatggacataacaagtttttcaaattactcaaacaagtaagttattttaattctcaaaactagtgaagtcactctaaactcatcttgctt |
21179532 |
T |
|
| Q |
113 |
caactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacctctcacattttgaaatgccggtgg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179533 |
caactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagagagtcttgaattttcaatacctctcacattttgaaatgccggtgg |
21179632 |
T |
|
| Q |
213 |
ctttggactaggaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtctatcttctggactttgttgaacacatagaagtcca |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21179633 |
ctttggactaagaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtctatcttctggactttgttgaacacatagaagtcca |
21179732 |
T |
|
| Q |
313 |
atattcacgtattttggtactaaatgct |
340 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
21179733 |
atattcacgtattttggtactaaatgct |
21179760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 80 - 340
Target Start/End: Complemental strand, 23190528 - 23190267
Alignment:
| Q |
80 |
aactagtgaagtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaat |
178 |
Q |
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|||||| |||||||||||||| ||||||||||||||| ||||||| ||||| |||||| ||||| |||| ||||||||||| | || |||||||||| |
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| T |
23190528 |
aactagcgaagtcactctaaaactcatcttgcttcaatgagtgaatctgtgatgccattcagagaaatgtttccttctatgctttttgagagtcttgaat |
23190429 |
T |
|
| Q |
179 |
tttcaatacctctcacattttgaaatgccggtggctttggactaggaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtct |
278 |
Q |
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||||||||||||||| ||||||||||| |||||||||||| | |||||||||| ||||||||| |||||||||| ||||||||||||||||||||| || |
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| T |
23190428 |
attcaatacctctcacgttttgaaatgctggtggctttggaatcggaagggatgcagtgtcattaccaatcattgatacaacatcagacatggttggcct |
23190329 |
T |
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| Q |
279 |
atcttctggactttgttgaacacatagaagtccaatattcacgtattttggtactaaatgct |
340 |
Q |
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|||||| ||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| |
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| T |
23190328 |
atcttccggactttgttgaacacagagaagtccgatattcacgtatcttggtactaaatgct |
23190267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 90 - 340
Target Start/End: Complemental strand, 23183142 - 23182891
Alignment:
| Q |
90 |
gtcactctaaa-ctcatcttgcttcaactagtgaatttgtgacaacattcacagaaacgttttcttctatgcttctagaaagtcttgaattttcaatacc |
188 |
Q |
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||||||||||| ||||||||||||||| | ||||| ||||| |||||||||||| |||| ||||||||||| | || ||||||||| ||| ||| || |
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| T |
23183142 |
gtcactctaaaactcatcttgcttcaatgactgaatctgtgatgccattcacagaaatgtttccttctatgctttttgagagtcttgaacttttaatgcc |
23183043 |
T |
|
| Q |
189 |
tctcacattttgaaatgccggtggctttggactaggaagggatgtagtgtcattcccaatcattgttacaacatcagacatggttggtctatcttctgga |
288 |
Q |
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|||||||||||||||||| |||||||||||| | ||||| |||| ||||||||| |||| ||||| ||||||||||||||||||||| ||||| || ||| |
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| T |
23183042 |
tctcacattttgaaatgctggtggctttggaatcggaagcgatgcagtgtcattaccaaacattgatacaacatcagacatggttggcctatcatccgga |
23182943 |
T |
|
| Q |
289 |
ctttgttgaacacatagaagtccaatattcacgtattttggtactaaatgct |
340 |
Q |
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|||||||||||||| |||||||| |||||||||||| || |||||||||||| |
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|
| T |
23182942 |
ctttgttgaacacagagaagtccgatattcacgtatcttagtactaaatgct |
23182891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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