View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_low_15 (Length: 348)
Name: NF6294_low_15
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 335
Target Start/End: Original strand, 43439537 - 43439852
Alignment:
| Q |
20 |
aacatgagctacaatctcatcaaaatcaagctaatcatatcttaggctgctttcctgattcataacttgagtgtgacannnnnnnnnnnnnnnnnnnnnn |
119 |
Q |
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| T |
43439537 |
aacatgagctacaatctcatcaaaatcaagctaatcatatcttaggttgctttcctgattcataacttgagtgtgacaatatatatattcatatattata |
43439636 |
T |
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| Q |
120 |
gccaataagtaagatgatatggattcattatatcttagttttccatttcatcttactacaaaactaatttagaattttctgatattatatacatttttta |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43439637 |
gccaataagtaagatgatatggattcattatatcttagttttccatttcatcttactacaaagctaatttagaattttctgatattatatacatttttta |
43439736 |
T |
|
| Q |
220 |
agtgataatggagattcacttgaagagtgacctaactccataatttgtttagagttcataattttctttctttcttttggattaccaattataagtttaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43439737 |
agtgataatggagattcacttgaagagtgacctagctccataatttgtttagagttcataattttctttctttcttttggattaccaattataagtttaa |
43439836 |
T |
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| Q |
320 |
ctttgtactgtgtcct |
335 |
Q |
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|||||||||||||||| |
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| T |
43439837 |
ctttgtactgtgtcct |
43439852 |
T |
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