View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_low_16 (Length: 337)
Name: NF6294_low_16
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 36 - 191
Target Start/End: Complemental strand, 37667558 - 37667403
Alignment:
| Q |
36 |
aagtagcaaccattcattttaaagagtcattgttcttttgactattttgattcttttttacatttgatattggttagatgagaaatacaacttatacatg |
135 |
Q |
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| T |
37667558 |
aagtagcaaccattcattttaaagagtcattgttcttttgactattttgattcttttttacatttgatattggttagaggagaaatacaacttatacatg |
37667459 |
T |
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| Q |
136 |
tatcacaatttacaactattcatcctaatgaaaatttaattggatcaatgttctgc |
191 |
Q |
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| T |
37667458 |
tatcacaatttacaactattcatcctaatgaaaatttaattggatcaatgttctgc |
37667403 |
T |
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Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 37667319 - 37667262
Alignment:
| Q |
267 |
taaaattaatcataaacttgagagttaaaatcacatttgttgataaagctataaatct |
324 |
Q |
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| T |
37667319 |
taaaattaatcataaacttgagagttaaaatcacatttgttgataaagctataaatct |
37667262 |
T |
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