View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6294_low_17 (Length: 308)
Name: NF6294_low_17
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 51010454 - 51010743
Alignment:
| Q |
1 |
gaacatgataacaaaagcttgatgacagaaaataatcaatatatgtttgtggatcctttagacacaaaaaagaagcaagaaaatgttgttggcagatcag |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51010454 |
gaacatgatagcaaaagcttgatgacagaaaataatcaatatgtgtttgtggatcctttagacacaaaaaagaagcaagaaaatgttgttggcagatcag |
51010553 |
T |
|
| Q |
101 |
attcaatgtcagattgcagtgatcaaaatgaagaagaggatgatggaaaatataggagaagaagtggaaaaggaaaccaatcaaagaaccttgttgctga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51010554 |
attcaatgtcagattgcagtgatcaaaatgaagaagaggatgatggaaaatataggagaagaagtggaaaaggaaaccaatcaaagaaccttgttgctga |
51010653 |
T |
|
| Q |
201 |
gagaaaaagaaggaagaaactgaatgataggttatataaccttcgttcattggttccaagaatctcaaagcttgatagagcttctattct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51010654 |
gagaaaaagaaggaagaaactgaatgataggttatataaccttcgttcattggttccaagaatctcaaagcttgatagagcttctattct |
51010743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University