View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_low_18 (Length: 287)
Name: NF6294_low_18
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 50 - 265
Target Start/End: Original strand, 11861563 - 11861778
Alignment:
| Q |
50 |
aagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacc |
149 |
Q |
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| T |
11861563 |
aagtcccttccatggggagttgaaaatgtgaacactttgaaagacttaaggatttatgattgtcatggtttaacttttttaccagaaagtataggtaacc |
11861662 |
T |
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| Q |
150 |
taacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattat |
249 |
Q |
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| T |
11861663 |
tcacttcacttgaaaaactggttctttctgaatgcagaaagttagattctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattat |
11861762 |
T |
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| Q |
250 |
ggattgccctttgtta |
265 |
Q |
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|||||||||||||||| |
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| T |
11861763 |
ggattgccctttgtta |
11861778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 49 - 265
Target Start/End: Original strand, 11829463 - 11829679
Alignment:
| Q |
49 |
gaagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaac |
148 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11829463 |
gaagtcccttccatggggagttgaaaacgtgaaaactttgaaagacttgaggatttatgattgtcatggtttaacttctttaccagaaagtataggtaac |
11829562 |
T |
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| Q |
149 |
ctaacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattatta |
248 |
Q |
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| T |
11829563 |
ctcacttcacttgaaagactggttctttctgaatgcagaaatttagattctcttcccaaaggaatggaaatgcttcagtctctaaatactttgattatta |
11829662 |
T |
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| Q |
249 |
tggattgccctttgtta |
265 |
Q |
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||||||||||||||||| |
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| T |
11829663 |
tggattgccctttgtta |
11829679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 94 - 265
Target Start/End: Original strand, 12040402 - 12040573
Alignment:
| Q |
94 |
cttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggttctttctgaatgcagaaagtta |
193 |
Q |
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||||||| ||||||||||||| |||||||||||| | || ||||| ||| | ||| | ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12040402 |
cttaaggctttatgattgccagggtttaacttctctcccggaaagcatatgcaacttcgcttcacttgaaaaactggttctttcggaatgcagaaagtta |
12040501 |
T |
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| Q |
194 |
ggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
265 |
Q |
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| T |
12040502 |
gattctctgcccaaaggaatggaaacgctacagtctctaaagactttgattattagggactgcccgttgtta |
12040573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 50 - 265
Target Start/End: Complemental strand, 11900955 - 11900740
Alignment:
| Q |
50 |
aagtcccttccatggggagctgaaaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacc |
149 |
Q |
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|||||||||||| ||| | ||||||| |||| ||||| | || |||||| ||||||||||||||||| ||||| || ||||||| |||||||||| |
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| T |
11900955 |
aagtcccttccaagggaaattgaaaacttgaactctttgcatgatttaaggctttatgattgccatggtctaactgacctaacagaaagcataggtaacc |
11900856 |
T |
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| Q |
150 |
taacttcacttgaaaaactggttctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattat |
249 |
Q |
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| ||||| |||| ||||| ||| |||||||||||||||| |||| || ||||||||| || ||||||| ||| ||||||||||||||||||||||||| |
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| T |
11900855 |
tcacttcccttggcaaactagttatttctgaatgcagaaatttagattatctgcccaaggggatggaaatgctacagtctctaaatactttgattattat |
11900756 |
T |
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| Q |
250 |
ggattgccctttgtta |
265 |
Q |
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|||||||||||||||| |
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| T |
11900755 |
ggattgccctttgtta |
11900740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 265
Target Start/End: Original strand, 11733276 - 11733468
Alignment:
| Q |
73 |
aaacgtgaaaactttgaaagacttaaggatttatgattgccatggtttaacttctttaccagaaagtataggtaacctaacttcacttgaaaaactggtt |
172 |
Q |
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|||| ||||| | |||||||| ||||||||||||||||||| | |||||||| ||||||||||| |||| || || ||||||||| |||||||| |
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| T |
11733276 |
aaacttgaaatcattgaaagatttaaggatttatgattgccctagtttaactcatttaccagaaaccatagacaatctcacttcacttcgtgaactggtt |
11733375 |
T |
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| Q |
173 |
ctttctgaatgcagaaagttaggttctctgcccaaaggaatggaaaagcttgagtctctaaatactttgattattatggattgccctttgtta |
265 |
Q |
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|||||||||||||||| | | ||||||||||||||||||| |||||| ||| ||| ||| ||||| |||||||| ||||| |||||| |
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| T |
11733376 |
ctttctgaatgcagaagtatggattctctgcccaaaggaatgataaagctcacgtcactatttaccttgatcattatggactgccccttgtta |
11733468 |
T |
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