View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6294_low_19 (Length: 282)

Name: NF6294_low_19
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6294_low_19
NF6294_low_19
[»] chr5 (31 HSPs)
chr5 (58-270)||(8318042-8318255)
chr5 (38-168)||(38952243-38952374)
chr5 (37-164)||(17421748-17421875)
chr5 (88-178)||(6260978-6261068)
chr5 (79-175)||(15294134-15294230)
chr5 (26-66)||(17209975-17210015)
chr5 (100-163)||(3349402-3349465)
chr5 (37-175)||(28747816-28747955)
chr5 (88-175)||(32736365-32736452)
chr5 (37-175)||(12910012-12910150)
chr5 (26-66)||(4736839-4736879)
chr5 (135-175)||(17233264-17233304)
chr5 (88-175)||(4738037-4738124)
chr5 (88-175)||(14369872-14369959)
chr5 (89-175)||(857996-858082)
chr5 (88-118)||(1797460-1797490)
chr5 (88-178)||(6436528-6436618)
chr5 (37-66)||(3960737-3960766)
chr5 (89-118)||(7014573-7014602)
chr5 (79-175)||(9124799-9124896)
chr5 (37-66)||(15809029-15809058)
chr5 (141-178)||(17232903-17232940)
chr5 (37-66)||(30688014-30688043)
chr5 (37-66)||(33696107-33696136)
chr5 (88-164)||(2695097-2695173)
chr5 (88-124)||(17605082-17605118)
chr5 (88-168)||(22701741-22701821)
chr5 (38-66)||(22800740-22800768)
chr5 (88-168)||(31752221-31752301)
chr5 (90-118)||(33282303-33282331)
chr5 (26-66)||(37282226-37282266)
[»] scaffold0418 (1 HSPs)
scaffold0418 (37-185)||(5752-5900)
[»] chr2 (32 HSPs)
chr2 (69-202)||(29452941-29453075)
chr2 (141-223)||(43660835-43660918)
chr2 (88-175)||(34082554-34082641)
chr2 (88-175)||(768664-768752)
chr2 (88-168)||(23387247-23387327)
chr2 (88-175)||(33739534-33739621)
chr2 (38-175)||(42850003-42850140)
chr2 (88-223)||(1576591-1576727)
chr2 (91-175)||(29512200-29512284)
chr2 (88-164)||(41528016-41528092)
chr2 (100-175)||(8386684-8386759)
chr2 (79-118)||(15554133-15554172)
chr2 (141-180)||(22711176-22711215)
chr2 (26-65)||(45629778-45629817)
chr2 (88-118)||(20939830-20939860)
chr2 (94-223)||(32601329-32601459)
chr2 (88-118)||(39904710-39904740)
chr2 (88-118)||(44257514-44257544)
chr2 (26-63)||(1297691-1297728)
chr2 (37-66)||(4293314-4293343)
chr2 (37-66)||(9690268-9690297)
chr2 (37-66)||(17265367-17265396)
chr2 (37-66)||(20939820-20939849)
chr2 (37-66)||(33173566-33173595)
chr2 (37-66)||(39904721-39904750)
chr2 (37-66)||(39906380-39906409)
chr2 (37-66)||(44257525-44257554)
chr2 (37-66)||(44542916-44542945)
chr2 (38-66)||(6332386-6332414)
chr2 (88-124)||(9690278-9690314)
chr2 (88-168)||(18370226-18370306)
chr2 (88-168)||(29511960-29512040)
[»] chr4 (32 HSPs)
chr4 (88-175)||(14948244-14948331)
chr4 (37-185)||(40496134-40496283)
chr4 (88-168)||(15725301-15725381)
chr4 (88-164)||(33106034-33106110)
chr4 (88-180)||(38425649-38425741)
chr4 (88-175)||(49425762-49425849)
chr4 (93-175)||(36955483-36955565)
chr4 (39-118)||(41172489-41172568)
chr4 (88-175)||(45875881-45875968)
chr4 (88-118)||(578868-578898)
chr4 (37-67)||(5157088-5157118)
chr4 (88-118)||(13621423-13621453)
chr4 (88-118)||(14202979-14203009)
chr4 (88-118)||(30258235-30258265)
chr4 (89-180)||(54742573-54742666)
chr4 (37-66)||(578858-578887)
chr4 (37-66)||(3818834-3818863)
chr4 (37-66)||(5046739-5046768)
chr4 (37-66)||(6137610-6137639)
chr4 (37-66)||(10216350-10216379)
chr4 (37-66)||(12584385-12584414)
chr4 (37-66)||(13211905-13211934)
chr4 (37-66)||(14202969-14202998)
chr4 (37-66)||(17181040-17181069)
chr4 (37-66)||(21519821-21519850)
chr4 (37-66)||(26958627-26958656)
chr4 (37-66)||(30258225-30258254)
chr4 (37-66)||(41172500-41172529)
chr4 (37-66)||(48560088-48560117)
chr4 (37-66)||(49970685-49970714)
chr4 (88-175)||(20458834-20458922)
chr4 (100-180)||(38425556-38425636)
[»] chr8 (35 HSPs)
chr8 (88-223)||(34102941-34103077)
chr8 (79-180)||(25123644-25123745)
chr8 (88-175)||(2823721-2823808)
chr8 (38-175)||(26043010-26043147)
chr8 (88-223)||(10616232-10616368)
chr8 (37-167)||(23544860-23544991)
chr8 (88-175)||(26630019-26630106)
chr8 (89-180)||(30633185-30633276)
chr8 (88-175)||(32069012-32069099)
chr8 (88-175)||(45299707-45299793)
chr8 (37-175)||(27545750-27545888)
chr8 (38-175)||(25123368-25123505)
chr8 (38-175)||(30207157-30207294)
chr8 (88-175)||(5946905-5946993)
chr8 (37-164)||(13269302-13269430)
chr8 (88-175)||(17691205-17691292)
chr8 (88-175)||(39922394-39922481)
chr8 (34-65)||(41942956-41942987)
chr8 (37-175)||(8258390-8258528)
chr8 (88-118)||(25281059-25281089)
chr8 (141-175)||(36899727-36899761)
chr8 (141-179)||(44873142-44873180)
chr8 (37-66)||(1783101-1783130)
chr8 (37-66)||(9483748-9483777)
chr8 (88-168)||(13468420-13468501)
chr8 (37-66)||(14826360-14826389)
chr8 (37-66)||(19971500-19971529)
chr8 (37-66)||(21021284-21021313)
chr8 (37-66)||(21442419-21442448)
chr8 (90-175)||(42556672-42556757)
chr8 (37-106)||(44874202-44874271)
chr8 (26-66)||(5642575-5642615)
chr8 (26-66)||(5644516-5644556)
chr8 (79-123)||(17884039-17884083)
chr8 (95-175)||(34969925-34970005)
[»] scaffold0325 (1 HSPs)
scaffold0325 (89-223)||(6660-6795)
[»] chr7 (38 HSPs)
chr7 (88-175)||(454225-454312)
chr7 (40-175)||(2509309-2509444)
chr7 (88-175)||(28912203-28912290)
chr7 (37-175)||(18352303-18352442)
chr7 (37-175)||(19069466-19069604)
chr7 (38-175)||(38796811-38796949)
chr7 (26-66)||(2362808-2362848)
chr7 (26-66)||(2633990-2634030)
chr7 (88-175)||(939016-939103)
chr7 (26-57)||(6736555-6736586)
chr7 (39-118)||(12080759-12080838)
chr7 (88-175)||(23740160-23740247)
chr7 (37-175)||(9401644-9401782)
chr7 (37-66)||(8048066-8048095)
chr7 (93-178)||(11766247-11766332)
chr7 (37-66)||(12080770-12080799)
chr7 (37-66)||(14770146-14770175)
chr7 (37-66)||(14777998-14778027)
chr7 (37-66)||(15220597-15220626)
chr7 (37-66)||(15230136-15230165)
chr7 (37-66)||(20516991-20517020)
chr7 (37-66)||(22479277-22479306)
chr7 (37-66)||(24720332-24720361)
chr7 (37-66)||(25818554-25818583)
chr7 (37-66)||(27812013-27812042)
chr7 (37-66)||(28605513-28605542)
chr7 (37-66)||(32852928-32852957)
chr7 (37-66)||(34986596-34986625)
chr7 (37-66)||(38876265-38876294)
chr7 (37-66)||(41407412-41407441)
chr7 (37-66)||(45225331-45225360)
chr7 (37-66)||(45225464-45225493)
chr7 (79-124)||(48193207-48193252)
chr7 (37-66)||(48454642-48454671)
chr7 (88-124)||(14719101-14719137)
chr7 (141-189)||(18829699-18829747)
chr7 (88-124)||(27811996-27812032)
chr7 (38-66)||(32577615-32577643)
[»] chr6 (20 HSPs)
chr6 (88-175)||(4838398-4838485)
chr6 (88-175)||(14488415-14488502)
chr6 (88-178)||(11742439-11742529)
chr6 (88-175)||(4898435-4898522)
chr6 (88-175)||(21969883-21969970)
chr6 (91-172)||(11009906-11009987)
chr6 (88-175)||(4898116-4898203)
chr6 (79-118)||(27828412-27828451)
chr6 (88-118)||(15962847-15962877)
chr6 (39-124)||(5187830-5187915)
chr6 (37-66)||(5187869-5187898)
chr6 (37-66)||(8171945-8171974)
chr6 (37-66)||(9955895-9955924)
chr6 (37-66)||(14488364-14488393)
chr6 (37-66)||(29646285-29646314)
chr6 (37-66)||(31132976-31133005)
chr6 (87-179)||(32889671-32889761)
chr6 (37-66)||(33730587-33730616)
chr6 (88-124)||(9955905-9955941)
chr6 (38-66)||(32889637-32889665)
[»] chr3 (21 HSPs)
chr3 (39-178)||(8814839-8814978)
chr3 (88-175)||(36824065-36824152)
chr3 (79-175)||(3800298-3800394)
chr3 (88-175)||(12127651-12127738)
chr3 (37-180)||(50912990-50913133)
chr3 (37-176)||(53467345-53467484)
chr3 (88-178)||(8815098-8815188)
chr3 (34-175)||(22894542-22894682)
chr3 (88-175)||(33837804-33837892)
chr3 (37-180)||(48765200-48765346)
chr3 (88-164)||(53581669-53581745)
chr3 (88-175)||(13349245-13349332)
chr3 (88-118)||(45059643-45059673)
chr3 (37-66)||(994822-994851)
chr3 (37-66)||(6114846-6114875)
chr3 (37-66)||(7848592-7848621)
chr3 (37-66)||(17226275-17226304)
chr3 (37-66)||(21727710-21727739)
chr3 (37-66)||(32203212-32203241)
chr3 (99-175)||(29239589-29239665)
chr3 (90-118)||(51148124-51148152)
[»] chr1 (18 HSPs)
chr1 (88-223)||(28704470-28704606)
chr1 (88-171)||(36389451-36389534)
chr1 (26-127)||(9005160-9005261)
chr1 (88-175)||(20201688-20201775)
chr1 (88-175)||(28454825-28454912)
chr1 (88-175)||(13157269-13157358)
chr1 (39-127)||(28182204-28182292)
chr1 (87-175)||(28764537-28764625)
chr1 (37-168)||(32156052-32156183)
chr1 (89-175)||(26842986-26843072)
chr1 (141-178)||(463003-463040)
chr1 (37-66)||(14387497-14387526)
chr1 (37-66)||(20411294-20411323)
chr1 (37-66)||(27389546-27389575)
chr1 (141-178)||(27787830-27787867)
chr1 (37-66)||(51431915-51431944)
chr1 (88-175)||(3273452-3273540)
chr1 (38-66)||(12864352-12864380)
[»] scaffold0627 (1 HSPs)
scaffold0627 (88-175)||(4179-4266)
[»] scaffold0015 (1 HSPs)
scaffold0015 (141-175)||(9721-9755)
[»] scaffold0068 (1 HSPs)
scaffold0068 (37-66)||(57964-57993)
[»] scaffold0217 (1 HSPs)
scaffold0217 (88-175)||(20608-20696)


Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 58 - 270
Target Start/End: Original strand, 8318042 - 8318255
Alignment:
Q  58 tctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccacttttta 157  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||    
T  8318042 tctagcaaaggtttgcggtagttgttaaattacacccacttattttttagaatgagtgtttcaacaacatgcacct-aaaatatatttaaccacttttta 8318140  T
Q  158 gttatatctttactaaaatac-tcttataaaaatcaaacgggtgtatcatagcaaatccatatatattaa-acttactctatttgtagattcaatataat 255  Q
    ||||||||||| ||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  8318141 gttatatctttgctaaaatacttcttataaaaaccaagcgggtgtatcatagcaaatccatatatattaagacttgctctatttgtagattcaatgtaat 8318240  T
Q  256 tgttcattagttcat 270  Q
    |||||||||||||||    
T  8318241 tgttcattagttcat 8318255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 168
Target Start/End: Original strand, 38952243 - 38952374
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccactta-ttttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||||||||||||| |||||||  |||| ||   ||||||| ||||||||| ||| |||||||||| |||| ||| | | |||| ||| | ||    
T  38952243 taaaaaataagtgggtgtattttagcaaatgtttgtggacgttgttaacttacacccatttatttttttagaacgagtgttttagccacattcatattaa 38952342  T
Q  137 aatatatttaaccactttttagttatatcttt 168  Q
    | | |||||||| |||||||||||||||||||    
T  38952343 agtgtatttaacaactttttagttatatcttt 38952374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 17421748 - 17421875
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||||||||||||||||||||||  | |   | | ||  |||  ||||||||||||||||||||||||||||||| | |||||| || || ||    
T  17421748 ctaaaaaataagtgggtgtattctagcaaatgtctataggagtttctaacatacacccacttattttttagaatgagtattttagcaacattcaccttaa 17421847  T
Q  137 aatatatttaaccactttttagttatat 164  Q
      | |||| ||| |||||||||||||||    
T  17421848 ggtgtattaaacaactttttagttatat 17421875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 6261068 - 6260978
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac 178  Q
    ||||||||||||||||||| || | || ||| |||||||| || || ||  | |||||||||||||||||||||||| ||| |||||||||    
T  6261068 tacacccacttattttttaaaaggtgtgttttaacaacattcaccttaaggtgtatttaaccactttttagttatatttttgctaaaatac 6260978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 15294134 - 15294230
Alignment:
Q  79 ttgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||  ||||| ||||||||||| | ||||||| ||| |||||||| ||||| ||| | |||||||| |||||||| |||| ||||| ||||||    
T  15294134 ttgttaacgtacactcacttatttttcaaaatgagtgttttaacaacattcatcttaaagtgtatttaacaactttttaattatgtctttgctaaaa 15294230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 17210015 - 17209975
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtattctagcaaa 66  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  17210015 ctaaaatactcctaaaaaataagtgggtgtattctagcaaa 17209975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 3349402 - 3349465
Alignment:
Q  100 ttttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttata 163  Q
    ||||||||||| ||| ||| |||| ||||||||| ||| ||||||||||||||||| |||||||    
T  3349402 ttttttagaataagtgtttaaacatcatgcatctcaaagtatatttaaccacttttaagttata 3349465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 28747816 - 28747955
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttatttttt-agaatgagtatttcaacaacatgcatctaa 135  Q
    ||||||| ||||||||||||||||||||||  | |   | | ||| |||  |||||||||||||||||| |||| ||||  || | |||||| || || |    
T  28747816 ctaaaaattaagtgggtgtattctagcaaatgtctataggagttgctaacatacacccacttatttttttagaaggagtgctttagcaacattcacctta 28747915  T
Q  136 aaatatatttaaccactttttagttatatctttactaaaa 175  Q
    | || |||||||| ||||||||||||||||||| ||||||    
T  28747916 agatgtatttaacaactttttagttatatctttgctaaaa 28747955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 32736365 - 32736452
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  32736365 tacacccacttattttttagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 32736452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 12910150 - 12910012
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||||||||||||||||||||||    |   | | ||| |||  ||||| ||||||| |||||||||| || ||| |||||||| || || ||    
T  12910150 ctaaaaaataagtgggtgtattctagcaaatgcctataggagttgctaacatacactcacttatattttagaatgtgtgttttaacaacattcaccttaa 12910051  T
Q  137 aatatatttaaccactttttagttatatctttactaaaa 175  Q
     || |||||||| | |||||| |||||||||| ||||||    
T  12910050 gatgtatttaacaattttttaattatatctttgctaaaa 12910012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 4736839 - 4736879
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtattctagcaaa 66  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  4736839 ctaaaatactcctaaaaaataagtggatgtattctagcaaa 4736879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 17233304 - 17233264
Alignment:
Q  135 aaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||| ||||||||||||||||||| ||||||    
T  17233304 aaaatatatttaacaactttttagttatatcttttctaaaa 17233264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 4738037 - 4738124
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||| |||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  4738037 tacacccacttatattttagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 4738124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 14369872 - 14369959
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||| | || ||| | |||||| || || ||  | || ||||| ||||||||||||||||||| ||||||    
T  14369872 tacacccacttattttttagaaggtgtgttttagcaacattcaccttaaggtgtagttaacaactttttagttatatctttgctaaaa 14369959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 857996 - 858082
Alignment:
Q  89 acacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||||| ||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  857996 acacccacttattttctagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 858082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 1797490 - 1797460
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  1797490 tacacccacttattttttagaatgagtattt 1797460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 6436528 - 6436618
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac 178  Q
    |||| |||||||||||||||||||  | ||| | ||| || || || ||  | |||||||| ||||||||||||||||||| |||||||||    
T  6436528 tacaaccacttattttttagaatgtttgttttagcaatattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaatac 6436618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 3960766 - 3960737
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  3960766 ctaaaaaataagtgggtgtattctagcaaa 3960737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 7014602 - 7014573
Alignment:
Q  89 acacccacttattttttagaatgagtattt 118  Q
    ||||||||||||||||||||||||||||||    
T  7014602 acacccacttattttttagaatgagtattt 7014573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 9124799 - 9124896
Alignment:
Q  79 ttgttaaattacacccacttatttttta-gaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||  ||||||||||||||||||| ||||| || ||| | |||||| || || ||  | |||||||| | ||||||||||||||||| ||||||    
T  9124799 ttgttaacatacacccacttattttttaagaatgtgtgttttagcaacattcaccttaaggtgtatttaacaaatttttagttatatctttgctaaaa 9124896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 15809029 - 15809058
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  15809029 ctaaaaaataagtgggtgtattctagcaaa 15809058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 17232940 - 17232903
Alignment:
Q  141 tatttaaccactttttagttatatctttactaaaatac 178  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  17232940 tatttaacaactttttagttatatctttgctaaaatac 17232903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 30688043 - 30688014
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  30688043 ctaaaaaataagtgggtgtattctagcaaa 30688014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 33696107 - 33696136
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  33696107 ctaaaaaataagtgggtgtattctagcaaa 33696136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 164
Target Start/End: Complemental strand, 2695173 - 2695097
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatat 164  Q
    |||||||||||||||||||||| | || ||| | |||||| || || || || |||||||| || ||||||||||||    
T  2695173 tacacccacttattttttagaaggtgtgttttagcaacattcaccttaagatgtatttaacaacattttagttatat 2695097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 17605118 - 17605082
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaa 124  Q
    |||||||||||||||||||||| |||||||| |||||    
T  17605118 tacacccacttattttttagaaggagtattttaacaa 17605082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 22701821 - 22701741
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatcttt 168  Q
    ||||||| |||||||||||||| | || ||| | |||||| || || ||| | ||||| || |||||||||||||||||||    
T  22701821 tacacccgcttattttttagaaggtgtgttttagcaacattcaccttaaagtgtatttcacaactttttagttatatcttt 22701741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 22800768 - 22800740
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaa 66  Q
    |||||||||||||||||||||||||||||    
T  22800768 taaaaaataagtgggtgtattctagcaaa 22800740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 31752221 - 31752301
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatcttt 168  Q
    |||||| ||||||||||||||| | || ||| | |||||| || || ||  | |||||||| |||||||||||||||||||    
T  31752221 tacacctacttattttttagaaggtgtgttttagcaacattcaccttaatgtgtatttaacaactttttagttatatcttt 31752301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 33282331 - 33282303
Alignment:
Q  90 cacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||    
T  33282331 cacccacttattttttagaatgagtattt 33282303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 37282226 - 37282266
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtattctagcaaa 66  Q
    |||||| |||||||||||||||||| ||||||| |||||||    
T  37282226 ctaaaatactcctaaaaaataagtgagtgtattttagcaaa 37282266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 185
Target Start/End: Original strand, 5752 - 5900
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||||||||||||||||||||||  | |   | | ||| ||| ||||||||||||||||||||||| | || ||| | |||||| || || ||    
T  5752 ctaaaaaataagtgggtgtattctagcaaatgtctataggagttgctaacttacacccacttattttttagaaggtgtgttttagcaacattcaccttaa 5851  T
Q  137 aatatatttaaccactttttagttatatctttactaaaatactcttata 185  Q
      |||||||||| ||||||||||||||||||| |||||| |||| ||||    
T  5852 ggtatatttaacaactttttagttatatcttttctaaaacactcctata 5900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 202
Target Start/End: Complemental strand, 29453075 - 29452941
Alignment:
Q  69 tttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatcttt 168  Q
    ||||||| | ||||||| |||||||||||||||||||| ||| | ||||| | ||||||| || | || || |||||| |||||||||||||||||||||    
T  29453075 tttgcggaagttgttaacttacacccacttattttttaaaataattattttagcaacatgtatgtgaagatgtatttatccactttttagttatatcttt 29452976  T
Q  169 actaaaata-ctcttataaaaatcaaacgggtgta 202  Q
     ||||||||  ||||| ||||| |||| |||||||    
T  29452975 gctaaaatatttcttaaaaaaaacaaatgggtgta 29452941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 43660835 - 43660918
Alignment:
Q  141 tatttaaccactttttagttatatctttactaaaatact-cttataaaaatcaaacgggtgtatcatagcaaatccatatatat 223  Q
    |||||||||||||||||||||||||||| |||||||||| || ||||||| |||  ||||||||| |||||||||| |||||||    
T  43660835 tatttaaccactttttagttatatctttcctaaaatactcctcataaaaaacaattgggtgtatcttagcaaatccctatatat 43660918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 34082641 - 34082554
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||||| || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  34082641 tacacccacttattttttagaatgtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 34082554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 768664 - 768752
Alignment:
Q  88 tacacccacttattttttagaatgagta-tttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||||| ||| ||| | |||||| || || ||  |||||||||| ||||||||||||||| ||| ||||||    
T  768664 tacacccacttattttttagaatgtgtatttttagcaacattcaccttaaggtatatttaacaactttttagttatatttttgctaaaa 768752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 23387247 - 23387327
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatcttt 168  Q
    |||||||||||||||||||||||| || ||| ||||| || || || ||  | |||||||| |||||||||||||||||||    
T  23387247 tacacccacttattttttagaatgtgtgttttaacaagattcaccttaaggtgtatttaacaactttttagttatatcttt 23387327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 33739621 - 33739534
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  33739621 tacacccacttattttttagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 33739534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 42850140 - 42850003
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaa 137  Q
    |||||||||||||| ||||||||||||||    |   | ||||| |||  ||||||||  |||| ||||||| |||| ||| | |||||| || || ||     
T  42850140 taaaaaataagtggatgtattctagcaaatgcctataggaattgctaacatacacccatctattctttagaaggagtgttttagcaacattcaccttaag 42850041  T
Q  138 atatatttaaccactttttagttatatctttactaaaa 175  Q
    || |||||||| ||||||||||||||||||| ||||||    
T  42850040 atgtatttaacaactttttagttatatctttgctaaaa 42850003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 1576727 - 1576591
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac-tcttataa 186  Q
    ||||||||||||||||| |||| | || ||| | |||||| || || ||  | |||| ||| |||||||||||||||||||||||||| ||  ||||  |    
T  1576727 tacacccacttatttttcagaaggtgtgttttatcaacattcaccttaaggtgtattcaacaactttttagttatatctttactaaaacacaccttaata 1576628  T
Q  187 aaatcaaacgggtgtatcatagcaaatccatatatat 223  Q
    ||| | |  ||||||||| ||||||| ||||||||||    
T  1576627 aaaactagtgggtgtatcctagcaaacccatatatat 1576591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 175
Target Start/End: Original strand, 29512200 - 29512284
Alignment:
Q  91 acccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||| ||||||| || ||| | |||||| || |  ||||| |||||||| | ||||||||||||||||| ||||||    
T  29512200 acccacttattttctagaatgtgtgttttagcaacattcaccataaaatgtatttaacaattttttagttatatctttgctaaaa 29512284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 41528016 - 41528092
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatat 164  Q
    ||||||||||||||||||| ||||||| ||| | ||| || ||||| ||  | |||||||| |||||||||||||||    
T  41528016 tacacccacttattttttaaaatgagtgttttagcaatattcatcttaaggtgtatttaacaactttttagttatat 41528092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 8386759 - 8386684
Alignment:
Q  100 ttttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||| |||| ||| | |||||| || || ||| | |||||||| ||||||||||||||||||| ||||||    
T  8386759 ttttttagaaggagtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatatctttgctaaaa 8386684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 15554133 - 15554172
Alignment:
Q  79 ttgttaaattacacccacttattttttagaatgagtattt 118  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  15554133 ttgttagaatacacccacttattttttagaatgagtattt 15554172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 180
Target Start/End: Complemental strand, 22711215 - 22711176
Alignment:
Q  141 tatttaaccactttttagttatatctttactaaaatactc 180  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  22711215 tatttaaccactttttagttatttatttactaaaatactc 22711176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 65
Target Start/End: Original strand, 45629778 - 45629817
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtattctagcaa 65  Q
    ||||||||| |||||||||||||||||| |||||||||||    
T  45629778 ctaaaacacacctaaaaaataagtgggtatattctagcaa 45629817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 20939830 - 20939860
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  20939830 tacacccacttattttttagaatgagtattt 20939860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 223
Target Start/End: Complemental strand, 32601459 - 32601329
Alignment:
Q  94 cacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac-tcttataaaaatca 192  Q
    |||||||||||||||||| || ||| | |||||| || || ||  |||| ||||| ||||||| ||||||||||| |||||| ||  ||||  |||| |     
T  32601459 cacttattttttagaatgtgtgttttagcaacattcaccttaaggtatacttaacaacttttttgttatatctttgctaaaacacaccttaataaaaact 32601360  T
Q  193 aacgggtgtatcatagcaaatccatatatat 223  Q
    |  ||||||||| ||||||| ||||||||||    
T  32601359 agtgggtgtatcctagcaaacccatatatat 32601329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 39904740 - 39904710
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  39904740 tacacccacttattttttagaatgagtattt 39904710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 44257544 - 44257514
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  44257544 tacacccacttattttttagaatgagtattt 44257514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 1297728 - 1297691
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtattctagc 63  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  1297728 ctaaaatactcctaaaaaataagtggttgtattctagc 1297691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 4293343 - 4293314
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  4293343 ctaaaaaataagtgggtgtattctagcaaa 4293314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 9690297 - 9690268
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  9690297 ctaaaaaataagtgggtgtattctagcaaa 9690268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 17265396 - 17265367
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  17265396 ctaaaaaataagtgggtgtattctagcaaa 17265367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 20939849 - 20939820
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  20939849 ctaaaaaataagtgggtgtattctagcaaa 20939820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 33173566 - 33173595
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  33173566 ctaaaaaataagtgggtgtattctagcaaa 33173595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 39904721 - 39904750
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  39904721 ctaaaaaataagtgggtgtattctagcaaa 39904750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 39906409 - 39906380
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  39906409 ctaaaaaataagtgggtgtattctagcaaa 39906380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 44257525 - 44257554
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  44257525 ctaaaaaataagtgggtgtattctagcaaa 44257554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 44542916 - 44542945
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  44542916 ctaaaaaataagtgggtgtattctagcaaa 44542945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 6332414 - 6332386
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaa 66  Q
    |||||||||||||||||||||||||||||    
T  6332414 taaaaaataagtgggtgtattctagcaaa 6332386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 9690278 - 9690314
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaa 124  Q
    |||||||||||||||||||||| |||||||| |||||    
T  9690278 tacacccacttattttttagaaggagtattttaacaa 9690314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 18370306 - 18370226
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatcttt 168  Q
    |||||||||||||||||||||| | |  ||| | |||||| || || ||  |||||||||| | |||||||||||||||||    
T  18370306 tacacccacttattttttagaaggtgcgttttagcaacattcaccttaaggtatatttaacaattttttagttatatcttt 18370226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 29512040 - 29511960
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatcttt 168  Q
    |||||||||||||||| ||||| | || ||| | |||||| ||  | || || |||||||| |||||||||||||||||||    
T  29512040 tacacccacttattttctagaaggtgtgttttagcaacattcactttaagatgtatttaacaactttttagttatatcttt 29511960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 14948244 - 14948331
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||||| || ||| | |||||| || || || || |||||||| ||||||||||||||||||||||||||    
T  14948244 tacacccacttattttttagaatgcgtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatctttactaaaa 14948331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 40496283 - 40496134
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttatttttt-agaatgagtatttcaacaacatgcatctaa 135  Q
    ||||||||||||||||||||||||||||||  | |   | | ||| ||| ||||||||||||||||||| |||| | || ||| | |||||| || || |    
T  40496283 ctaaaaaataagtgggtgtattctagcaaatgtctataggagttgctaacttacacccacttatttttttagaaggtgtgttttagcaacattcacctta 40496184  T
Q  136 aaatatatttaaccactttttagttatatctttactaaaatactcttata 185  Q
    |  |||||||||| ||||||||||||||||||| |||||| |||| ||||    
T  40496183 aggtatatttaacaactttttagttatatcttttctaaaacactcctata 40496134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 15725301 - 15725381
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatcttt 168  Q
    ||||| |||||||||||||||| | || ||| |||||||| || || || || |||||||| |||||||||||||||||||    
T  15725301 tacactcacttattttttagaaggtgtgttttaacaacattcaccttaagatgtatttaacaactttttagttatatcttt 15725381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 33106034 - 33106110
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatat 164  Q
    |||||||||||||||||||||||| || ||| | |||||| || || ||| | |||||||| |||||||||||||||    
T  33106034 tacacccacttattttttagaatgtgtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatat 33106110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 180
Target Start/End: Complemental strand, 38425741 - 38425649
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatactc 180  Q
    ||||||||||||||||||| |||| || ||| |||||||| || || ||  | |||||||| |||||| |||||||||||| |||||| ||||    
T  38425741 tacacccacttattttttaaaatgtgtgttttaacaacattcaccttaaggtgtatttaacaacttttcagttatatctttgctaaaacactc 38425649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 49425849 - 49425762
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  49425849 tacacccacttattttttagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 49425762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 36955483 - 36955565
Alignment:
Q  93 ccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||||| || ||| ||| | |||||| || || ||| |||||||||| | ||||||||||||||||| ||||||    
T  36955483 ccacttattttttagtataagtgttttagcaacattcaccttaaagtatatttaacaattttttagttatatctttgctaaaa 36955565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 41172568 - 41172489
Alignment:
Q  39 aaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtattt 118  Q
    ||||||||| ||||||| ||||||||||  ||   || | ||| || | |||||||||||||||||||||||||||||||    
T  41172568 aaaaaataaatgggtgtgttctagcaaatcttataggcatttgctagaatacacccacttattttttagaatgagtattt 41172489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 45875881 - 45875968
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||||||||| |||| || ||| | |||||| || || ||  | |||||||| | ||||||||||||||||| ||||||    
T  45875881 tacacccacttattttttaaaatgtgtgttttagcaacattcaccttaaggtgtatttaacaattttttagttatatctttgctaaaa 45875968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 578868 - 578898
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  578868 tacacccacttattttttagaatgagtattt 578898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 5157088 - 5157118
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaag 67  Q
    |||||||||||||||||||||||||||||||    
T  5157088 ctaaaaaataagtgggtgtattctagcaaag 5157118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 13621423 - 13621453
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  13621423 tacacccacttattttttagaatgagtattt 13621453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 14202979 - 14203009
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  14202979 tacacccacttattttttagaatgagtattt 14203009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 30258235 - 30258265
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  30258235 tacacccacttattttttagaatgagtattt 30258265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 54742573 - 54742666
Alignment:
Q  89 acacccacttatttt--ttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatactc 180  Q
    |||||||||||||||  |||||||| || ||| | |||||| ||||| || || |||||||| | ||||| ||||||||||| |||||| ||||    
T  54742573 acacccacttattttttttagaatgtgtgttttagcaacattcatcttaagatgtatttaacaaatttttcgttatatctttgctaaaacactc 54742666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 578887 - 578858
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  578887 ctaaaaaataagtgggtgtattctagcaaa 578858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 3818834 - 3818863
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  3818834 ctaaaaaataagtgggtgtattctagcaaa 3818863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 5046768 - 5046739
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  5046768 ctaaaaaataagtgggtgtattctagcaaa 5046739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 6137639 - 6137610
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  6137639 ctaaaaaataagtgggtgtattctagcaaa 6137610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 10216379 - 10216350
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  10216379 ctaaaaaataagtgggtgtattctagcaaa 10216350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 12584414 - 12584385
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  12584414 ctaaaaaataagtgggtgtattctagcaaa 12584385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 13211905 - 13211934
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  13211905 ctaaaaaataagtgggtgtattctagcaaa 13211934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 14202998 - 14202969
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  14202998 ctaaaaaataagtgggtgtattctagcaaa 14202969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 17181040 - 17181069
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  17181040 ctaaaaaataagtgggtgtattctagcaaa 17181069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 21519821 - 21519850
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  21519821 ctaaaaaataagtgggtgtattctagcaaa 21519850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 26958627 - 26958656
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  26958627 ctaaaaaataagtgggtgtattctagcaaa 26958656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 30258254 - 30258225
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  30258254 ctaaaaaataagtgggtgtattctagcaaa 30258225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 41172500 - 41172529
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  41172500 ctaaaaaataagtgggtgtattctagcaaa 41172529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 48560088 - 48560117
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  48560088 ctaaaaaataagtgggtgtattctagcaaa 48560117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 49970685 - 49970714
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  49970685 ctaaaaaataagtgggtgtattctagcaaa 49970714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 20458922 - 20458834
Alignment:
Q  88 tacacccacttatt-ttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||| |||||||| |||| ||| |||||||| || || ||  | |||||||| ||||||||  ||||||||| ||||||    
T  20458922 tacacccacttatttttttagaaggagtgttttaacaacattcaccttaaggtgtatttaacaactttttaactatatctttgctaaaa 20458834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 38425636 - 38425556
Alignment:
Q  100 ttttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatactc 180  Q
    |||||||||| | || ||| |||||||| || || ||  | |||||||| ||||||||||||||| |||||||||| ||||    
T  38425636 ttttttagaaggtgtgttttaacaacattcaccttaaggtgtatttaacaactttttagttatatttttactaaaacactc 38425556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 34103077 - 34102941
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac-tcttataa 186  Q
    |||||||||||||||||||||||| || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| |||||| ||  ||||  |    
T  34103077 tacacccacttattttttagaatgtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaacacaccttaata 34102978  T
Q  187 aaatcaaacgggtgtatcatagcaaatccatatatat 223  Q
    ||| | | |||||||||| ||||||| ||||||||||    
T  34102977 aaaactagcgggtgtatcctagcaaacccatatatat 34102941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 25123745 - 25123644
Alignment:
Q  79 ttgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac 178  Q
    |||||||  |||||||||||||||||||||||| || ||| | |||||| || || ||| | |||||||| ||||||||||||||||| | |||||| ||    
T  25123745 ttgttaacatacacccacttattttttagaatgtgtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatatctatgctaaaacac 25123646  T
Q  179 tc 180  Q
    ||    
T  25123645 tc 25123644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 2823721 - 2823808
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||| ||||||||||||||| || ||| | |||||| || || || || |||||||| ||||||||||||||||||| ||||||    
T  2823721 tacacccaattattttttagaatgtgtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatctttgctaaaa 2823808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 175
Target Start/End: Original strand, 26043010 - 26043147
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaa 137  Q
    |||||||||||||||||||| ||||||||    |   | | |||||||  |||||||||||||||||||||| | |||||| | ||| || || || ||     
T  26043010 taaaaaataagtgggtgtatcctagcaaatgcctataggagttgttaacatacacccacttattttttagaaggtgtattttagcaatattcaccttaag 26043109  T
Q  138 atatatttaaccactttttagttatatctttactaaaa 175  Q
     | |||||||| ||||||||||||||||||| ||||||    
T  26043110 gtgtatttaacaactttttagttatatctttgctaaaa 26043147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 10616368 - 10616232
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac-tcttataa 186  Q
    |||||||||||||||||||||| | || ||| | ||| || || || ||  |||||||||| ||||||||||||||||||| |||||| ||  ||||  |    
T  10616368 tacacccacttattttttagaaggtgtgttttagcaatattcaccttaatgtatatttaacaactttttagttatatctttgctaaaacacaccttaata 10616269  T
Q  187 aaatcaaacgggtgtatcatagcaaatccatatatat 223  Q
    ||| | |  ||||||||| ||||||| ||||||||||    
T  10616268 aaaactagtgggtgtatcctagcaaacccatatatat 10616232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 23544860 - 23544991
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttatttttta-gaatgagtatttcaacaacatgcatctaa 135  Q
    ||||||||||||||||||||||||| ||||  | |   | | ||| |||  ||||||||||||||||||| ||||| || ||| | |||||| || || |    
T  23544860 ctaaaaaataagtgggtgtattctaacaaatgtctataggagttgctaacatacacccacttattttttaagaatgtgtgttttagcaacattcacctta 23544959  T
Q  136 aaatatatttaaccactttttagttatatctt 167  Q
    | || |||||||| ||||||||||||||||||    
T  23544960 agatgtatttaacaactttttagttatatctt 23544991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 26630106 - 26630019
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  26630106 tacacccacttattttttagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 26630019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 30633185 - 30633276
Alignment:
Q  89 acacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatactc 180  Q
    ||||||||||||||||||||| | || ||| | |||||| ||||| ||  | |||||||| ||||||||||||||| ||| |||||| ||||    
T  30633185 acacccacttattttttagaaggtgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatatttttgctaaaacactc 30633276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 32069099 - 32069012
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  32069099 tacacccacttattttttagaaagtgtgttttagcaacattcaccttaaggtttatttaacaactttttagttatatctttgctaaaa 32069012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 45299707 - 45299793
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||| | || ||| | |||||| || || ||| | |||||||| || |||||||||||||||||||||||    
T  45299707 tacacccacttattttttagaaggtgtgttttagcaacattcaccttaaagtgtatttaacaac-ttttagttatatctttactaaaa 45299793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 27545888 - 27545750
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||||||||||||| ||||||||   ||   | | ||| |||  ||||||||||||| |||||||| | || ||| | |||||| || || ||    
T  27545888 ctaaaaaataagtgggtgtatcctagcaaatgcttataggagttgctaacatacacccacttatattttagaaggtgtgttttagcaacattcaccttaa 27545789  T
Q  137 aatatatttaaccactttttagttatatctttactaaaa 175  Q
      | |||||||| ||||||||||||||||||| ||||||    
T  27545788 ggtgtatttaacaactttttagttatatctttgctaaaa 27545750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 25123505 - 25123368
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaa 137  Q
    |||||||||||||||||||||||||||||  | |   |   ||| |||  |||| ||| ||||||||||||| | || ||| | |||||| || || |||    
T  25123505 taaaaaataagtgggtgtattctagcaaatgtctataggcgttgctaacatacaaccatttattttttagaaggtgtgttttagcaacattcaccttaaa 25123406  T
Q  138 atatatttaaccactttttagttatatctttactaaaa 175  Q
     | |||||||| | ||||||||||||||||||||||||    
T  25123405 gtgtatttaacaattttttagttatatctttactaaaa 25123368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 30207294 - 30207157
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaa 137  Q
    |||||||||||||||||||||||||||||    |   | | ||| |||  |||||||||||||||||||||  | || ||| | |||||| || || ||     
T  30207294 taaaaaataagtgggtgtattctagcaaatgcctataggagttgctaacatacacccacttattttttagatggtgtgttttagcaacattcaccttaag 30207195  T
Q  138 atatatttaaccactttttagttatatctttactaaaa 175  Q
     | |||||||| ||||||||||||||| ||||||||||    
T  30207194 gtgtatttaacaactttttagttatatatttactaaaa 30207157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 5946905 - 5946993
Alignment:
Q  88 tacacccacttatttttt-agaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||| |||| | || |||||||||||| || || ||  | |||||||| ||||||||||||||| ||| ||||||    
T  5946905 tacacccacttatttttttagaaggtgtgtttcaacaacattcaccttaaggtttatttaacaactttttagttatatatttgctaaaa 5946993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 13269302 - 13269430
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttatttttt-agaatgagtatttcaacaacatgcatctaa 135  Q
    ||||||||||||||||||||||||||||||  |||   | | ||| |||  |||||||||||||||||| |||||| || ||| | |||||| || || |    
T  13269302 ctaaaaaataagtgggtgtattctagcaaatgtttataggagttgctaacatacacccacttattttttaagaatgtgtgttttagcaacattcacctta 13269401  T
Q  136 aaatatatttaaccactttttagttatat 164  Q
    |  | |||||||| |||||||| ||||||    
T  13269402 aggtgtatttaacaactttttaattatat 13269430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 17691292 - 17691205
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||| ||| ||||||    
T  17691292 tacacccacttattttttagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatttttgctaaaa 17691205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 39922394 - 39922481
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||| |||||||||||||||||| || ||| | |||||| || ||  |  | |||||||| ||||||||||||||||||| ||||||    
T  39922394 tacactcacttattttttagaatgtgtgttttagcaacattcaccttgaggtgtatttaacaactttttagttatatctttgctaaaa 39922481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 41942987 - 41942956
Alignment:
Q  34 ctcctaaaaaataagtgggtgtattctagcaa 65  Q
    ||||||||||||||||||||||||||||||||    
T  41942987 ctcctaaaaaataagtgggtgtattctagcaa 41942956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 8258390 - 8258528
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||||||||||||||||||||||    |   | | ||| |||  ||||||||||||||||||| || || | ||| | |||||| || || ||    
T  8258390 ctaaaaaataagtgggtgtattctagcaaatgcctataggagttgctaacatacacccacttattttttataaggaatgttttagcaacattcaccttaa 8258489  T
Q  137 aatatatttaaccactttttagttatatctttactaaaa 175  Q
      | |||||||| | ||||||||||||||||| ||||||    
T  8258490 ggtgtatttaacaattttttagttatatctttgctaaaa 8258528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 25281059 - 25281089
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  25281059 tacacccacttattttttagaatgagtattt 25281089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 36899761 - 36899727
Alignment:
Q  141 tatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||| ||||||||||||||||||||||||||    
T  36899761 tatttaacaactttttagttatatctttactaaaa 36899727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 44873142 - 44873180
Alignment:
Q  141 tatttaaccactttttagttatatctttactaaaatact 179  Q
    |||||||| ||||||||||||||||||| ||||||||||    
T  44873142 tatttaactactttttagttatatctttgctaaaatact 44873180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 1783130 - 1783101
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  1783130 ctaaaaaataagtgggtgtattctagcaaa 1783101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 9483777 - 9483748
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  9483777 ctaaaaaataagtgggtgtattctagcaaa 9483748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 13468420 - 13468501
Alignment:
Q  88 tacacccacttatttttta-gaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatcttt 168  Q
    ||||||||||||||||||| ||| | || ||| | |||||| ||||| ||  | |||||||| |||||||||||||||||||    
T  13468420 tacacccacttattttttaagaaggtgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatatcttt 13468501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 14826360 - 14826389
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  14826360 ctaaaaaataagtgggtgtattctagcaaa 14826389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 19971500 - 19971529
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  19971500 ctaaaaaataagtgggtgtattctagcaaa 19971529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 21021313 - 21021284
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  21021313 ctaaaaaataagtgggtgtattctagcaaa 21021284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 21442419 - 21442448
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  21442419 ctaaaaaataagtgggtgtattctagcaaa 21442448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 175
Target Start/End: Complemental strand, 42556757 - 42556672
Alignment:
Q  90 cacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||||||| || | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  42556757 cacccacttattttttaaaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 42556672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 106
Target Start/End: Original strand, 44874202 - 44874271
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttatttttta 106  Q
    |||||||||||||||||||||||||||||   | ||  | | |||||||  |||||||||||||||||||    
T  44874202 ctaaaaaataagtgggtgtattctagcaattgtctgtaggagttgttaacatacacccacttatttttta 44874271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 5642575 - 5642615
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtattctagcaaa 66  Q
    |||||| ||||||| |||| |||||||||||||||||||||    
T  5642575 ctaaaatactcctacaaaaaaagtgggtgtattctagcaaa 5642615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 5644516 - 5644556
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtattctagcaaa 66  Q
    |||||| ||||||| |||| |||||||||||||||||||||    
T  5644516 ctaaaatactcctacaaaaaaagtgggtgtattctagcaaa 5644556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 17884039 - 17884083
Alignment:
Q  79 ttgttaaattacacccacttattttttagaatgagtatttcaaca 123  Q
    |||||||| |||| |||||||||||||||||||||| ||| ||||    
T  17884039 ttgttaaaatacatccacttattttttagaatgagtgttttaaca 17884083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 175
Target Start/End: Original strand, 34969925 - 34970005
Alignment:
Q  95 acttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||| |||| || ||| | |||||| || || ||| | |||||||  ||||||| ||||||||||||||||||    
T  34969925 acttattttttacaatgtgtgttttagcaacattcaccttaaagtgtatttaataactttttggttatatctttactaaaa 34970005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 223
Target Start/End: Original strand, 6660 - 6795
Alignment:
Q  89 acacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac-tcttataaa 187  Q
    ||||||| ||||||||||||| | || ||| | |||||| || || ||| |||||||||| ||||||||||||||||||| |||||| ||  ||||  ||    
T  6660 acacccaattattttttagaaggtgtgttttagcaacattcacctcaaagtatatttaacaactttttagttatatctttgctaaaacacaccttaataa 6759  T
Q  188 aatcaaacgggtgtatcatagcaaatccatatatat 223  Q
    || | |  ||||||||||||||||| ||||||||||    
T  6760 aaactagtgggtgtatcatagcaaacccatatatat 6795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 454225 - 454312
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||||| || ||| |||||||| ||||| ||  | |||||||| ||||||||||||||| ||| ||||||    
T  454225 tacacccacttattttttagaatgtgtgttttaacaacattcatcttaaggtgtatttaacaactttttagttatatatttgctaaaa 454312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 175
Target Start/End: Complemental strand, 2509444 - 2509309
Alignment:
Q  40 aaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaat 139  Q
    |||||||||||||||||||||||||||    |   | | |||||||  |||||||||||||| ||||||||| || ||| | |||||| || || || ||    
T  2509444 aaaaataagtgggtgtattctagcaaatgcatataggagttgttaacatacacccacttattctttagaatgtgtgttttagcaacattcaccttaagat 2509345  T
Q  140 atatttaaccactttttagttatatctttactaaaa 175  Q
     |||||||| ||||||||||||||||||| ||||||    
T  2509344 gtatttaacaactttttagttatatctttgctaaaa 2509309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 28912203 - 28912290
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||||| || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  28912203 tacacccacttattttttagaatgtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 28912290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 18352442 - 18352303
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttatttttta-gaatgagtatttcaacaacatgcatctaa 135  Q
    ||||||||||||||||||||||||||||||    |   | | ||| |||  ||||||||||||||||||| ||| | || ||| | |||||| ||||| |    
T  18352442 ctaaaaaataagtgggtgtattctagcaaatgcctataggagttgctaacatacacccacttattttttaagaaggtgtgttttagcaacattcatctta 18352343  T
Q  136 aaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |  | |||||||| |||||||||||||||||| |||||||    
T  18352342 aggtgtatttaacaactttttagttatatcttcactaaaa 18352303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 19069466 - 19069604
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||||||||||||| |||||||| |  |   | | ||| |||  || |||||||||| |||||||| | || ||| | |||||| || || ||    
T  19069466 ctaaaaaataagtgggtgtatcctagcaaatagctataggagttgctaacataaacccacttatattttagaaggtgtgttttagcaacattcaccttaa 19069565  T
Q  137 aatatatttaaccactttttagttatatctttactaaaa 175  Q
      | |||||||| ||||||||||||||||||||||||||    
T  19069566 ggtgtatttaacaactttttagttatatctttactaaaa 19069604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 175
Target Start/End: Complemental strand, 38796949 - 38796811
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttatttttt-agaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||| |||||||||||||||||  | |   | | ||| |||  |||||||||||||||||| ||||||| |  || | |||||| ||||| ||    
T  38796949 taaaaaataagcgggtgtattctagcaaatgtctataggagttgctaacatacacccacttatttttttagaatgaatgctttagcaacattcatcttaa 38796850  T
Q  137 aatatatttaaccactttttagttatatctttactaaaa 175  Q
      | |||||||| ||||||||||||||||||| ||||||    
T  38796849 ggtgtatttaacaactttttagttatatctttgctaaaa 38796811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 2362808 - 2362848
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||| |||||||||||||||||||||| ||||||||    
T  2362808 ctaaaacacacctaaaaaataagtgggtgtatcctagcaaa 2362848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Complemental strand, 2634030 - 2633990
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  2634030 ctaaaacacacctaaaaaataagtaggtgtattctagcaaa 2633990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 939016 - 939103
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||| ||||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  939016 tacacccacttactttttagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 939103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 57
Target Start/End: Original strand, 6736555 - 6736586
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtat 57  Q
    ||||||||||||||||||||||||||||||||    
T  6736555 ctaaaacactcctaaaaaataagtgggtgtat 6736586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 118
Target Start/End: Complemental strand, 12080838 - 12080759
Alignment:
Q  39 aaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtattt 118  Q
    ||||||||||||||||| ||||||||||   |   || | ||| || | |||||||||||||||||||||||||||||||    
T  12080838 aaaaaataagtgggtgtgttctagcaaatcctataggcatttgctagaatacacccacttattttttagaatgagtattt 12080759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 23740160 - 23740247
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||| |||||||||||||||| |||| ||| ||||| || || || ||  | |||||||| | ||||||||||||||||| ||||||    
T  23740160 tacacacacttattttttagaaggagtgttttaacaatattcaccttaaggtgtatttaacaattttttagttatatctttgctaaaa 23740247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 9401782 - 9401644
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||||||||||||||||||||||    |   | | ||| |||  ||||||||||||| |||||||| | || ||| | | |||| || || ||    
T  9401782 ctaaaaaataagtgggtgtattctagcaaatgcctataggagttgctaacatacacccacttatattttagaaggtgtgttttagctacattcaccttaa 9401683  T
Q  137 aatatatttaaccactttttagttatatctttactaaaa 175  Q
      | |||||||| ||||||||||||||||||| ||||||    
T  9401682 ggtgtatttaacaactttttagttatatctttgctaaaa 9401644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 8048095 - 8048066
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  8048095 ctaaaaaataagtgggtgtattctagcaaa 8048066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 178
Target Start/End: Original strand, 11766247 - 11766332
Alignment:
Q  93 ccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac 178  Q
    ||||||||||||||||||| || ||| | |||||| ||  | ||  | |||||||| |||||||| |||||||||| |||||||||    
T  11766247 ccacttattttttagaatgtgtgttttagcaacattcacattaaggtgtatttaacaactttttaattatatctttgctaaaatac 11766332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 12080770 - 12080799
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  12080770 ctaaaaaataagtgggtgtattctagcaaa 12080799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 14770146 - 14770175
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  14770146 ctaaaaaataagtgggtgtattctagcaaa 14770175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 14777998 - 14778027
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  14777998 ctaaaaaataagtgggtgtattctagcaaa 14778027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 15220597 - 15220626
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  15220597 ctaaaaaataagtgggtgtattctagcaaa 15220626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 15230136 - 15230165
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  15230136 ctaaaaaataagtgggtgtattctagcaaa 15230165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 20516991 - 20517020
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  20516991 ctaaaaaataagtgggtgtattctagcaaa 20517020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 22479277 - 22479306
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  22479277 ctaaaaaataagtgggtgtattctagcaaa 22479306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 24720332 - 24720361
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  24720332 ctaaaaaataagtgggtgtattctagcaaa 24720361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 25818554 - 25818583
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  25818554 ctaaaaaataagtgggtgtattctagcaaa 25818583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 27812013 - 27812042
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  27812013 ctaaaaaataagtgggtgtattctagcaaa 27812042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 28605513 - 28605542
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  28605513 ctaaaaaataagtgggtgtattctagcaaa 28605542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 32852928 - 32852957
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  32852928 ctaaaaaataagtgggtgtattctagcaaa 32852957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 34986596 - 34986625
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  34986596 ctaaaaaataagtgggtgtattctagcaaa 34986625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 38876294 - 38876265
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  38876294 ctaaaaaataagtgggtgtattctagcaaa 38876265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 41407412 - 41407441
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  41407412 ctaaaaaataagtgggtgtattctagcaaa 41407441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 45225331 - 45225360
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  45225331 ctaaaaaataagtgggtgtattctagcaaa 45225360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 45225464 - 45225493
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  45225464 ctaaaaaataagtgggtgtattctagcaaa 45225493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 124
Target Start/End: Complemental strand, 48193252 - 48193207
Alignment:
Q  79 ttgttaaattacacccacttattttttagaatgagtatttcaacaa 124  Q
    |||||| | |||||||||||||||||||||| |||||||| |||||    
T  48193252 ttgttagaatacacccacttattttttagaaggagtattttaacaa 48193207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 48454671 - 48454642
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  48454671 ctaaaaaataagtgggtgtattctagcaaa 48454642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 14719101 - 14719137
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaa 124  Q
    |||||||||||||||||||||| |||||||| |||||    
T  14719101 tacacccacttattttttagaaggagtattttaacaa 14719137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 18829699 - 18829747
Alignment:
Q  141 tatttaaccactttttagttatatctttactaaaatactcttataaaaa 189  Q
    ||||||||||||||||||||||    |||||||||||||||| ||||||    
T  18829699 tatttaaccactttttagttattcacttactaaaatactcttttaaaaa 18829747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 27812032 - 27811996
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaa 124  Q
    |||||||||||||||||||||| |||||||| |||||    
T  27812032 tacacccacttattttttagaaggagtattttaacaa 27811996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 32577615 - 32577643
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaa 66  Q
    |||||||||||||||||||||||||||||    
T  32577615 taaaaaataagtgggtgtattctagcaaa 32577643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 4838398 - 4838485
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||| | || ||| | |||||| ||||| ||  | |||||||| ||||||||||||||||||||||||||    
T  4838398 tacacccacttattttttagaaggtgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatatctttactaaaa 4838485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 14488415 - 14488502
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||| ||||||||||||||||||||| ||| |||||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  14488415 tacactcacttattttttagaatgagtgttttaacaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 14488502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 11742439 - 11742529
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac 178  Q
    |||||||||||||||||||||| | || ||| | ||| || || || ||||| |||||||| ||||||||||||||||||| |||||||||    
T  11742439 tacacccacttattttttagaaggtgtgttttagcaaaatacaccttaaaatgtatttaacaactttttagttatatctttgctaaaatac 11742529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 4898522 - 4898435
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||||||||| || | || ||| | |||||| || || ||| | |||||||| ||||||||||||||||||| ||||||    
T  4898522 tacacccacttattttttaaaaggtgtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatatctttgctaaaa 4898435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 21969970 - 21969883
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||||||||||||    ||||| |||||||| ||||| ||  | |||||||| || |||||||||||||||| ||||||    
T  21969970 tacacccacttattttttagaaattatattttaacaacattcatcttaaggtgtatttaacaacattttagttatatctttgctaaaa 21969883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 172
Target Start/End: Complemental strand, 11009987 - 11009906
Alignment:
Q  91 acccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttacta 172  Q
    |||||||||||||||||||||||| ||| | |||||| || || ||  |||||||||| |  ||||| ||||||||||||||    
T  11009987 acccacttattttttagaatgagtcttttagcaacattcaccttaaggtatatttaacaatattttaattatatctttacta 11009906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 4898203 - 4898116
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||| ||||||||||||||||| || ||| | |||||| ||||| || || ||||  || ||||||||||||||||| | ||||||    
T  4898203 tacaccaacttattttttagaatgtgtgttttagcaacattcatcttaagatgtattggacaactttttagttatatctatcctaaaa 4898116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 27828412 - 27828451
Alignment:
Q  79 ttgttaaattacacccacttattttttagaatgagtattt 118  Q
    |||||| | |||||||||||||||||||||||||||||||    
T  27828412 ttgttagaatacacccacttattttttagaatgagtattt 27828451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 15962847 - 15962877
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  15962847 tacacccacttattttttagaatgagtattt 15962877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 5187830 - 5187915
Alignment:
Q  39 aaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaa 124  Q
    ||||||||||||||||| ||||||||||   |   || | ||| || | ||||||||||||||||||||| ||||||||| |||||    
T  5187830 aaaaaataagtgggtgtgttctagcaaaacctacaggcatttgctagaatacacccacttattttttagattgagtattttaacaa 5187915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 5187898 - 5187869
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  5187898 ctaaaaaataagtgggtgtattctagcaaa 5187869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 8171945 - 8171974
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  8171945 ctaaaaaataagtgggtgtattctagcaaa 8171974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 9955924 - 9955895
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  9955924 ctaaaaaataagtgggtgtattctagcaaa 9955895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 14488364 - 14488393
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  14488364 ctaaaaaataagtgggtgtattctagcaaa 14488393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 29646285 - 29646314
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  29646285 ctaaaaaataagtgggtgtattctagcaaa 29646314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 31133005 - 31132976
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  31133005 ctaaaaaataagtgggtgtattctagcaaa 31132976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 32889761 - 32889671
Alignment:
Q  87 ttacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatact 179  Q
    ||||| ||||||| |||||||||||||| ||  | |||||||||| | ||  | |||||||||||  |||||||||||||||  |||||||||    
T  32889761 ttacatccacttagtttttagaatgagtgttatagcaacatgcattttaaggtgtatttaaccac--tttagttatatctttgttaaaatact 32889671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 33730587 - 33730616
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  33730587 ctaaaaaataagtgggtgtattctagcaaa 33730616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 9955905 - 9955941
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaa 124  Q
    |||||||||||||||||||||| |||||||| |||||    
T  9955905 tacacccacttattttttagaaagagtattttaacaa 9955941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 32889665 - 32889637
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaa 66  Q
    |||||||||||||||||||||||||||||    
T  32889665 taaaaaataagtgggtgtattctagcaaa 32889637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 8814839 - 8814978
Alignment:
Q  39 aaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaa 138  Q
    ||||||||||||||||||||||||||||   ||   | | ||| |||  |||||||||||||||||||||||| || ||| | |||||| || || |  |    
T  8814839 aaaaaataagtgggtgtattctagcaaatgcttatagaagttgctaacatacacccacttattttttagaatgtgtgttttagcaacattcaccttagga 8814938  T
Q  139 tatatttaaccactttttagttatatctttactaaaatac 178  Q
    | |||||||| | ||||||||||||||||| |||||||||    
T  8814939 tgtatttaacaattttttagttatatctttgctaaaatac 8814978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 36824065 - 36824152
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||||| || ||| |||||||| ||||| ||  | |||||||| |||||||| |||||||||| ||||||    
T  36824065 tacacccacttattttttagaatgtgtgttttaacaacattcatcttaaggtgtatttaacaactttttaattatatctttgctaaaa 36824152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 3800298 - 3800394
Alignment:
Q  79 ttgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||  |||||||||||||||||||||| | |||||| | |||||| || || || || |||||||| |||||||||||||||| || ||||||    
T  3800298 ttgttaacatacacccacttattttttagaaggtgtattttagcaacattcaccttaagatgtatttaacaactttttagttatatcattgctaaaa 3800394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 12127651 - 12127738
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  12127651 tacacccacttattttttagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 12127738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 50913133 - 50912990
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||| ||||||||||||||||||||||    ||  | | ||| |||  |||||||| ||||||||||||||  || ||| | |||||| || || ||    
T  50913133 ctaaaaattaagtgggtgtattctagcaaatgcctgtaggagttgctaacatacacccatttattttttagaatatgtgttttatcaacattcaccttaa 50913034  T
Q  137 aatatatttaaccactttttagttatatctttactaaaatactc 180  Q
      | |||||||| ||||||||||||||| ||| |||||||||||    
T  50913033 ggtgtatttaacaactttttagttatatttttgctaaaatactc 50912990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 53467484 - 53467345
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||||||||||||||||||||||    | |   | ||| |||  |||||| |||||| |||||||||| || ||| | |||||| || || ||    
T  53467484 ctaaaaaataagtgggtgtattctagcaaatgcctacatgagttgctaacatacaccaacttatattttagaatgtgtgttttagcaacatccaccttaa 53467385  T
Q  137 aatatatttaaccactttttagttatatctttactaaaat 176  Q
      | |||||||| ||||||||||||||||||| |||||||    
T  53467384 ggtgtatttaacaactttttagttatatctttgctaaaat 53467345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 8815098 - 8815188
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac 178  Q
    |||||||||||||||||||||| | || ||| | |||||| || || |  || |||||||| | ||||||||||||||||| |||||||||    
T  8815098 tacacccacttattttttagaacgtgtgttttagcaacattcaccttaggatgtatttaacaattttttagttatatctttgctaaaatac 8815188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 175
Target Start/End: Complemental strand, 22894682 - 22894542
Alignment:
Q  34 ctcctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatct 133  Q
    |||||||||||||||||||||||| ||||||||  |||   | | ||| |||  |||||||||||||||||||| ||| || ||| | |||||| ||  |    
T  22894682 ctcctaaaaaataagtgggtgtatcctagcaaatgtttataggagttgctaacatacacccacttattttttag-atgtgtgttttagcaacattcactt 22894584  T
Q  134 aaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
     ||  | |||||||| | ||||||||||||||||| ||||||    
T  22894583 taaggtgtatttaacaattttttagttatatctttgctaaaa 22894542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 33837892 - 33837804
Alignment:
Q  88 tacacccacttatttttt-agaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||| |||| | || ||| | |||||| || || || || |||||||| ||||||||||||||||||| ||||||    
T  33837892 tacacccacttatttttttagaaggtgtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatctttgctaaaa 33837804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 180
Target Start/End: Complemental strand, 48765346 - 48765200
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaa---caacatgcatct 133  Q
    ||||||||||| |||||||||| ||||||| ||     | | |||||||  |||||||||||||||| ||||| | || ||| |    |||||| || ||    
T  48765346 ctaaaaaataaatgggtgtattttagcaaatatccataggagttgttaacatacacccacttattttgtagaaagtgtgttttagtagcaacattcacct 48765247  T
Q  134 aaaaatatatttaaccactttttagttatatctttactaaaatactc 180  Q
     || || |||||||| |||||||||||||||||||||||||| ||||    
T  48765246 taagatgtatttaacaactttttagttatatctttactaaaacactc 48765200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 164
Target Start/End: Original strand, 53581669 - 53581745
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatat 164  Q
    |||||||||||||||||||||||| || ||| | |||||| || || ||  | |||||||| |||||||||||||||    
T  53581669 tacacccacttattttttagaatgtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatat 53581745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 13349245 - 13349332
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||| |||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  13349245 tacacccacttatattttagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 13349332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 118
Target Start/End: Original strand, 45059643 - 45059673
Alignment:
Q  88 tacacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||||    
T  45059643 tacacccacttattttttagaatgagtattt 45059673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 994851 - 994822
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  994851 ctaaaaaataagtgggtgtattctagcaaa 994822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 6114846 - 6114875
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  6114846 ctaaaaaataagtgggtgtattctagcaaa 6114875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 7848592 - 7848621
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  7848592 ctaaaaaataagtgggtgtattctagcaaa 7848621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 17226304 - 17226275
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  17226304 ctaaaaaataagtgggtgtattctagcaaa 17226275  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 21727710 - 21727739
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  21727710 ctaaaaaataagtgggtgtattctagcaaa 21727739  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 32203212 - 32203241
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  32203212 ctaaaaaataagtgggtgtattctagcaaa 32203241  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 29239665 - 29239589
Alignment:
Q  99 attttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||| ||| | |||||| || || ||  | ||||||||  |||||||||||||||||| ||||||    
T  29239665 attttttagaatgagtgttttagcaacattcaccttaaggtgtatttaacagctttttagttatatctttgctaaaa 29239589  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 118
Target Start/End: Original strand, 51148124 - 51148152
Alignment:
Q  90 cacccacttattttttagaatgagtattt 118  Q
    |||||||||||||||||||||||||||||    
T  51148124 cacccacttattttttagaatgagtattt 51148152  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 28704470 - 28704606
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaatac-tcttataa 186  Q
    ||||| || ||||||||||||||| || ||| |||||||| || || ||  | |||||||| ||||||||||||||||||| |||||| ||  ||| |||    
T  28704470 tacactcatttattttttagaatgtgtgttttaacaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaacacaccttctaa 28704569  T
Q  187 aaatcaaacgggtgtatcatagcaaatccatatatat 223  Q
    | |  ||| || |||||||||||||| ||||||||||    
T  28704570 agaataaatggatgtatcatagcaaacccatatatat 28704606  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 171
Target Start/End: Complemental strand, 36389534 - 36389451
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttact 171  Q
    |||||||||||||||||||||| | || ||| | |||||| || || || || |||||||| ||||||||||||||||||||||    
T  36389534 tacacccacttattttttagaaggtgtgttttagcaacattcaccttaagatgtatttaacaactttttagttatatctttact 36389451  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 9005261 - 9005160
Alignment:
Q  26 ctaaaacactcctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaac 125  Q
    |||||||||| ||||||||||||| |||||||| |||||||   ||| || | ||| ||| |||||||||| |||| |||||||| ||| ||| ||||||    
T  9005261 ctaaaacacttctaaaaaataagtaggtgtattttagcaaatgattgtgggagttgctaacttacacccacatattatttagaataagtgttttaacaac 9005162  T
Q  126 at 127  Q
    ||    
T  9005161 at 9005160  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 20201775 - 20201688
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||||||||| |||| || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  20201775 tacacccacttattttttataatgtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 20201688  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 28454825 - 28454912
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||| |||||||||| | || ||| | |||||| || || || || |||||||| ||||||||||||||||||| ||||||    
T  28454825 tacacccactttttttttagaaggtgtgttttagcaacattcagcttaagatgtatttaacaactttttagttatatctttgctaaaa 28454912  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 13157358 - 13157269
Alignment:
Q  88 tacacccacttatttttt--agaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||||||||  ||||| ||| ||| | |||||| || || ||| | |||||||| ||||||||||||||||||| ||||||    
T  13157358 tacacccacttattttttttagaattagtgttttagcaacattcaccttaaagtgtatttaacaactttttagttatatctttgctaaaa 13157269  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 127
Target Start/End: Original strand, 28182204 - 28182292
Alignment:
Q  39 aaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacat 127  Q
    ||||||||||| |||||||| |||||||   ||| || | ||| ||| |||| ||||||||||||||||||||||| |||  |||||||    
T  28182204 aaaaaataagttggtgtattttagcaaatgcttgtgggagttgctaacttacgcccacttattttttagaatgagtgttttgacaacat 28182292  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 28764625 - 28764537
Alignment:
Q  87 ttacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    ||||||||||||||||||||||||| || ||| | |||||| ||  | ||  | |||||||| | ||||||||||||||||| ||||||    
T  28764625 ttacacccacttattttttagaatgtgtgttttagcaacattcacattaaggtgtatttaacaattttttagttatatctttgctaaaa 28764537  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 168
Target Start/End: Original strand, 32156052 - 32156183
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaagatttgcggtaattgttaaattacacccacttattttttagaatgagtatttcaacaacatgcatctaaa 136  Q
    ||||||||||||||||||||||||||||||    | | | | ||| |||  ||||||||||||||||||||||   || ||| | |||||| ||||| ||    
T  32156052 ctaaaaaataagtgggtgtattctagcaaatgcatacaggagttgctaacatacacccacttattttttagaaacggtgttttagcaacattcatcttaa 32156151  T
Q  137 aatatatttaaccactttttagttatatcttt 168  Q
      |  ||||||| | |||||||||||||||||    
T  32156152 ggtgcatttaacaattttttagttatatcttt 32156183  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 26843072 - 26842986
Alignment:
Q  89 acacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||| |||||||| || ||| | ||| || || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  26843072 acacccacttatttattagaatgtgtgttttagcaatattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 26842986  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 463040 - 463003
Alignment:
Q  141 tatttaaccactttttagttatatctttactaaaatac 178  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  463040 tatttaacaactttttagttatatctttgctaaaatac 463003  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 14387526 - 14387497
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  14387526 ctaaaaaataagtgggtgtattctagcaaa 14387497  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 20411323 - 20411294
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  20411323 ctaaaaaataagtgggtgtattctagcaaa 20411294  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 27389546 - 27389575
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  27389546 ctaaaaaataagtgggtgtattctagcaaa 27389575  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 27787867 - 27787830
Alignment:
Q  141 tatttaaccactttttagttatatctttactaaaatac 178  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  27787867 tatttaacaactttttagttatatctttgctaaaatac 27787830  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 51431915 - 51431944
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  51431915 ctaaaaaataagtgggtgtattctagcaaa 51431944  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 3273452 - 3273540
Alignment:
Q  88 tacacccacttatttttt-agaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||| |||||||||  || | |||||| || || ||  | |||||||| | ||||||||||||||||| ||||||    
T  3273452 tacacccacttatttttttagaatgagtgctttagcaacatccaccttaaggtgtatttaacaattttttagttatatctttgctaaaa 3273540  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 12864352 - 12864380
Alignment:
Q  38 taaaaaataagtgggtgtattctagcaaa 66  Q
    |||||||||||||||||||||||||||||    
T  12864352 taaaaaataagtgggtgtattctagcaaa 12864380  T

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Target: scaffold0627 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 4179 - 4266
Alignment:
Q  88 tacacccacttattttttagaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||| ||||||||||||||||| | || ||| | |||||| || || ||  | |||||||| ||||||||||||||||||| ||||||    
T  4179 tacatccacttattttttagaaggtgtgttttagcaacattcaccttaaggtgtatttaacaactttttagttatatctttgctaaaa 4266  T

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Target: scaffold0015 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 175
Target Start/End: Complemental strand, 9755 - 9721
Alignment:
Q  141 tatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||| ||||||||||||||||||||||||||    
T  9755 tatttaacaactttttagttatatctttactaaaa 9721  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Original strand, 57964 - 57993
Alignment:
Q  37 ctaaaaaataagtgggtgtattctagcaaa 66  Q
    ||||||||||||||||||||||||||||||    
T  57964 ctaaaaaataagtgggtgtattctagcaaa 57993  T

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Target: scaffold0217 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 88 - 175
Target Start/End: Complemental strand, 20696 - 20608
Alignment:
Q  88 tacacccacttatttttt-agaatgagtatttcaacaacatgcatctaaaaatatatttaaccactttttagttatatctttactaaaa 175  Q
    |||||||||||||||||| |||| | || ||| | |||||| ||||| ||  | |||||||| ||||||||||||||| ||| ||||||    
T  20696 tacacccacttatttttttagaaggtgtgttttagcaacattcatcttaaggtgtatttaacaactttttagttatatttttgctaaaa 20608  T

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