View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_low_27 (Length: 240)
Name: NF6294_low_27
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 42800158 - 42800303
Alignment:
| Q |
19 |
ccaagtagcatcttcaggtgcatcaacatccacaacaggtgcactcagaatattgtgacgtgctagtattttcacagcttcagccaaggtagcatctgat |
118 |
Q |
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| T |
42800158 |
ccaagtagcatcttcaggtgcatcaacatccacaacaggtgcactcagaatattgtgacgtgctagtattttcacagcttcagccaaggtagcatctgat |
42800257 |
T |
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| Q |
119 |
tttatttcaatttctatacaagcaaacataaaattcacacttttag |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42800258 |
tttatttcaatttctatacaagcaaacataaaattcacacttttag |
42800303 |
T |
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