View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_low_3 (Length: 556)
Name: NF6294_low_3
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 542
Target Start/End: Original strand, 37394635 - 37395160
Alignment:
| Q |
17 |
atactccataaatctatttgtatcaccacatctgatatggttccacatcaacatctcagattaaagtctttccaaactaatgaatcttgatttgagaatt |
116 |
Q |
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| T |
37394635 |
atactccataaatctatttgtatcaccacatctgatatggttccacatcaacatctcagattaaagtctttccaaactaatgaatcttgatttgagaatt |
37394734 |
T |
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| Q |
117 |
gcaaatgctcttaacatcatgggaacccggcgccatattaaccgtgatgttacatgtattgtaagccgttcccttcaatttgatatacttaagaacaatc |
216 |
Q |
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| T |
37394735 |
gcaaatgctcttaacatcatgggaacccggcgccatattaaccgtgatgttacatgtattgtaagctgttcccttcaatttgatatacttaagaacaatc |
37394834 |
T |
|
| Q |
217 |
actttaccaggaaattcagcctttgatatcaatgtaaatttataacctggtacaacttctttccagaagtcagggttatttatcaatttattcaccgtca |
316 |
Q |
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| T |
37394835 |
actttaccaggaaattcagcctttgatatcaatgtaaatttataacctggtacaacttctttccagaagtcagggttatttatcaatttattcaccgtca |
37394934 |
T |
|
| Q |
317 |
taagtgtataagtggacacgtttatttcactacgtgccgggactaattgtgactcgattggaacagtacctacaacagtatcatgataagtgacataact |
416 |
Q |
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| T |
37394935 |
taagtgtataagtggacacgtttatttcactatgtgccgggactaattgtgactcaattggaacagtacctacaacagtatcatgataagtgacataact |
37395034 |
T |
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| Q |
417 |
atatgattttttaaattcgaagctcccaaaattagggttccctattgtgaccaacgtggatatgttcataattacgggcatatcgggtgaaagtagatcg |
516 |
Q |
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| T |
37395035 |
atatgattttttaaattcgaagctcccaaaattagggttccctattgtgaccaacgtggatatgttcataattatgggcatatcgggtgaaagtagatcg |
37395134 |
T |
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| Q |
517 |
acaggttcaacatggacaacaatatt |
542 |
Q |
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| T |
37395135 |
acaggttcaacatggacaacaatatt |
37395160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 326 - 416
Target Start/End: Original strand, 37361800 - 37361890
Alignment:
| Q |
326 |
aagtggacacgtttatttcactacgtgccgggactaattgtgactcgattggaacagtacctacaacagtatcatgataagtgacataact |
416 |
Q |
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|||||| ||| || |||||||||||||| || || | ||||||||| ||||||||| | ||||||| ||||||||||||| ||| |||||| |
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| T |
37361800 |
aagtggtcacattaatttcactacgtgctggaacaagttgtgactctattggaacattgcctacaatagtatcatgataattgatataact |
37361890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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