View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_low_4 (Length: 540)
Name: NF6294_low_4
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 65 - 528
Target Start/End: Complemental strand, 35905473 - 35905010
Alignment:
| Q |
65 |
tggtcataataagagttttgttattggtggtgctgccggtggtgcggcaggttttgcaattgttgctgctatatgtgttgctgttcatcacaggaagaag |
164 |
Q |
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| T |
35905473 |
tggtcataataagagttttgttattggtggtgctgccggtggtgcggcaggttttgcaattgttgctgctatatgtgttgctgttcatcacaggaagaag |
35905374 |
T |
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| Q |
165 |
agagcaccaggtaatgttattcttgatagaagtctttgataagaaaaagtaaaatgaaaattatattcataacgagagaatatgaaacgtcaattacgct |
264 |
Q |
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| T |
35905373 |
agagcaccaggtaatgttattcttgatagaagtctttgataagaaaaagtaaaatgaaaattatattgataacgagagaatatgaaacgtgaattacgct |
35905274 |
T |
|
| Q |
265 |
aaaagagtatataagatttatatagccaatgagaataacaactaactagtgtaattaactaattttatatctgataccaggttcatacacaaacaccaca |
364 |
Q |
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| T |
35905273 |
aaaagagtatataagatttatatagccaatgagaataacaactaactagtgtaattaactaattttatatctgataccaggttcatacacaaacaccaca |
35905174 |
T |
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| Q |
365 |
tcaagttggttgcctctctatggaaattctcacacaaccggaacgaaatcaacaggatcagggaagagtactatgggcagtggtgcaaatttagccatgg |
464 |
Q |
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| T |
35905173 |
tcaagttggttgcctctctatggaaattctcacacaaccggaacgaaatcaacaggatcagggaagagtactatgggcagtggtgcaaatttagccatgg |
35905074 |
T |
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| Q |
465 |
ctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatga |
528 |
Q |
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| T |
35905073 |
ctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatga |
35905010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 30522167 - 30522111
Alignment:
| Q |
181 |
ttattcttgatagaagtctttgata-agaaaaagtaaaatgaaaattatattcataa |
236 |
Q |
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| T |
30522167 |
ttatttttgatagaagtcattgatatagaaaaagtaaaatggaaattatattgataa |
30522111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 528
Target Start/End: Original strand, 47624163 - 47624233
Alignment:
| Q |
458 |
gccatggctcaaggactgtgtcgatatttctctttacaagagatgaagcaagcaaccaagaattttgatga |
528 |
Q |
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| T |
47624163 |
gccatgacccaaggtctatgtcgctatttttcgttacaagagataaagcaagcaaccaacagttttgatga |
47624233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 227
Target Start/End: Complemental strand, 484018 - 483972
Alignment:
| Q |
182 |
tattcttgatagaagtctttgataaga-aaaagtaaaatgaaaatta |
227 |
Q |
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| T |
484018 |
tattcttaatagaagtcattgataagagaaaagtaaaatgaaaatta |
483972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Original strand, 13868806 - 13868847
Alignment:
| Q |
285 |
tatagccaatgagaataacaactaactagtgtaattaactaa |
326 |
Q |
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| T |
13868806 |
tatagccaatgagaataacgactaactaatgtaactaactaa |
13868847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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