View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_low_5 (Length: 438)
Name: NF6294_low_5
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 5 - 438
Target Start/End: Original strand, 3959700 - 3960135
Alignment:
| Q |
5 |
caacacattaacggtccgtcccatatggatctgatctaaagatagatcatctcactataattagtaaaagtttaatacaagannnnnnnnnnnnnnnnnn |
104 |
Q |
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| T |
3959700 |
caacacattaacggtccgtcccatatggatctgatctaaagatagatcatctcactataattagtaaaagtttaatgcaatattttttttctcaattttt |
3959799 |
T |
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| Q |
105 |
nn-attgaaacaaccaaatttattaagccaagcatgtgtaagatacacaaaataaggatgaaaccgaaacaaaatacaaggcgacaaatatatgcgaccc |
203 |
Q |
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| T |
3959800 |
tttattgaaacaaccaaatttgttaagccaagcatgtgtaagatacacaaaacaaggacgaaaccgaaacaaaatacaaggtgccgaatat--gcggcct |
3959897 |
T |
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| Q |
204 |
aagtgtgaatacagtgattccgtatacatgagaaacccccaaaaacaaaagccaaaagatcagccaaccgcttaactactaccctcaaccgatgcccctg |
303 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
3959898 |
aagtgtgaatacagtgattccgtatacatgaggaacccccaaaaacaaaagccaaaagatcagccaaccacctaactactaccctcaaccgatgcccctg |
3959997 |
T |
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| Q |
304 |
gacactccagaccnnnnnnncaaccgaaaaccactgctgcacccaaccaatacgaaaccaaaaccaagtgcgacacgaaacagcagcaaaaccgggtcaa |
403 |
Q |
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| T |
3959998 |
gacactcaagacaaaaaaaacaaccgaaaaccactgctgcacccgactaatacgaaatcaaaaccaagccggaaacgaaacagcagcaaaaccaggtcaa |
3960097 |
T |
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| Q |
404 |
ct---cagcagcagaacagaccacaccagcagctacca |
438 |
Q |
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| T |
3960098 |
ctcggcagcagcagaacagaccacacctgcagcaacca |
3960135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 236 - 434
Target Start/End: Original strand, 3960310 - 3960508
Alignment:
| Q |
236 |
aaacccccaaaaacaaaagccaaaagatcagccaaccgcttaactactaccctcaaccgatgcccctggacactccagaccnnnnnnncaaccgaaaacc |
335 |
Q |
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| T |
3960310 |
aaacccccaaaaacaaaagccaaaagatcagccaaccgcttaactactaccctcaaccaatgcccctggacgctccagaccaaaaaaataaccgaaaacc |
3960409 |
T |
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| Q |
336 |
actgctgcacccaaccaatacgaaaccaaaaccaagtgcgacacgaaacagcagcaaaaccgggtcaactcagcagcagaacagaccacaccagcagct |
434 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3960410 |
actgctgcacccgaccaatacgaaaccaaaaccaagtccgacacgaaacagcagcaaaaccgggtcaactcagcaacagaacagaccacaccagcagct |
3960508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 5757200 - 5757164
Alignment:
| Q |
119 |
aaatttattaagccaagcatgtgtaagatacacaaaa |
155 |
Q |
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| T |
5757200 |
aaatttattaagccaagtatgtgtaagaaacacaaaa |
5757164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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