View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6294_low_7 (Length: 421)
Name: NF6294_low_7
Description: NF6294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6294_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 6 - 405
Target Start/End: Complemental strand, 20600165 - 20599762
Alignment:
| Q |
6 |
aatactcttattaggtaaagttacactcataggtttaatttcatagtaaataatgaaccaactcaaatcatgacaagtgtgatgtgtagcacttgtgtca |
105 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20600165 |
aatactcttattaggtaaagttacactcataggtttaatttcatagtaaataatgaaccaactcaaatcatgacaagtgtgatgtgtagcacctgtgtca |
20600066 |
T |
|
| Q |
106 |
actatccagctagtgtcatcaaatttgcaactagcattactgttaa-gaatttacctccaatatttgcagttgagct---ggctttcatcacatttgcag |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
20600065 |
actatccagctagtgtcatcaaatttgcaactagcattactggtaaagaatttacctccaatatttgcagttgagctactggccttcatcacatttgcag |
20599966 |
T |
|
| Q |
202 |
agcctttagcttcaatgtttcttttctccaaaaatgcaatcaaattctgatactgatctttggtcagcatcattccattttcatcatttttcctagtgga |
301 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||| |
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| T |
20599965 |
agcctttagcttcaatgttgcttttctccaacaatgcaatcaaattctgatactgatctttggttagcattattccattttcatcatttttcccagtgga |
20599866 |
T |
|
| Q |
302 |
agcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20599865 |
agcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttc |
20599766 |
T |
|
| Q |
402 |
ttat |
405 |
Q |
| |
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|||| |
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|
| T |
20599765 |
ttat |
20599762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 4695605 - 4695655
Alignment:
| Q |
355 |
aagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttat |
405 |
Q |
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| T |
4695605 |
aagaatttcctcctcctctaccccaattaggaggaaagccatgcttcttat |
4695655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 405
Target Start/End: Original strand, 5153872 - 5154270
Alignment:
| Q |
11 |
tcttattaggtaaagttacactcataggtttaatttcatagtaaataatgaaccaactcaaatcatgacaagtgtgatgtgtagcacttgtgtcaactat |
110 |
Q |
| |
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|||||||||| ||||| ||||| |||||||||||||||| ||| || ||||||| |||||||||| ||||||||||||||||| || |||||||||||| |
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| T |
5153872 |
tcttattaggcaaagtaacactaataggtttaatttcattataagtagtgaaccagctcaaatcatcacaagtgtgatgtgtagaacctgtgtcaactat |
5153971 |
T |
|
| Q |
111 |
ccagctagtgtcatcaaatttgcaactagcattactgttaa-gaatttacctccaatatttgcagttga---gctggctttcatcacatttgcagagcct |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| |||| |||||| ||||||||||||||||||||| |
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| T |
5153972 |
ccagctagtgtcatcaaatttgcaactagcattactggtaaagaatttacctccaatattagcaattgaactgctggccttcatcacatttgcagagcct |
5154071 |
T |
|
| Q |
207 |
ttagcttcaatgtttcttttctccaaaaatgcaatcaaattctgatactgatctttggtcagcatcattccattttcatcatttttcctagtggaagcat |
306 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| | |||||| |
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|
| T |
5154072 |
ttagcttcaatgttgcttttctccaacagtgcaatcaaattctgatactggtctttggttagcatcatttcattttcatcatttttcccaatggaagtgc |
5154171 |
T |
|
| Q |
307 |
ttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttcttat |
405 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
5154172 |
ttcccttgagctcagtatcttcacattccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattaggaggataaccatgtttcttat |
5154270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 22842012 - 22841956
Alignment:
| Q |
347 |
attagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttctt |
403 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||| || |||||||| ||||| ||||| |
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|
| T |
22842012 |
attagcataggaatttcctccacctcttccccagtttggagggtatccatgcttctt |
22841956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 6 - 403
Target Start/End: Original strand, 31233198 - 31233599
Alignment:
| Q |
6 |
aatactcttattaggtaaagttacactcataggtttaatttcatagtaaataatgaaccaactcaaatcatgacaagtgtgatgtgtagcacttgtgtca |
105 |
Q |
| |
|
|||| |||| || ||||||| ||||| || |||||||||||| ||| || |||||||||| ||||||||||| || || ||||| |||| || ||| |
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| T |
31233198 |
aatattcttgttgggtaaagcaacactaattggtttaatttcactataactagtgaaccaacttaaatcatgacatgtatggtgtgttgcaccagtatca |
31233297 |
T |
|
| Q |
106 |
actatccagctagtgtcatcaaatttgcaactagcattactgttaa-gaatttacctccaatatttgcagttgagct---ggctttcatcacatttgcag |
201 |
Q |
| |
|
|| ||||| ||| | ||||||| ||||||| |||||||| || ||| || |||||||||||| || || ||||||| || ||||||| ||||| | |
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|
| T |
31233298 |
acaatccaactactatcatcaattttgcaaatagcattattgataaagagtttacctccaatgttaacacttgagctcttggtcttcatcatgtttgctg |
31233397 |
T |
|
| Q |
202 |
agcctttagcttcaatgtttcttttctccaaaaatgcaatcaaattctgatactgatctttggtcagcatcattccattttcatcatttttcctagtgga |
301 |
Q |
| |
|
| ||||||||||||| || ||| | ||||| |||||||||||||| ||||||||||| || || |||||||||||| |||||||||||||| || || |
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|
| T |
31233398 |
aacctttagcttcaacattgcttctttccaataatgcaatcaaattttgatactgatccttagttagcatcattccaccttcatcatttttcccagcaga |
31233497 |
T |
|
| Q |
302 |
agcatttcccttgagctcagtttcttcactttccacaaaattagcattagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttc |
401 |
Q |
| |
|
|| |||| || ||| ||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||||||| | |||||||||||| |
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|
| T |
31233498 |
agtgcttcctttagattcaacatcttcacaatccacaaagttagcatttgcaaaagaatttccacctcctctgccccaattaggaagctaaccatgtttc |
31233597 |
T |
|
| Q |
402 |
tt |
403 |
Q |
| |
|
|| |
|
|
| T |
31233598 |
tt |
31233599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 347 - 403
Target Start/End: Complemental strand, 14233518 - 14233462
Alignment:
| Q |
347 |
attagcaaaagaatttcctcctcctcttccccaattaggagggtaaccatgtttctt |
403 |
Q |
| |
|
||||||| | ||||||||||| ||||||||||| || |||||||| ||||| ||||| |
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|
| T |
14233518 |
attagcataggaatttcctccacctcttccccagtttggagggtatccatgcttctt |
14233462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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