View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6295_high_1 (Length: 607)

Name: NF6295_high_1
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6295_high_1
NF6295_high_1
[»] chr6 (11 HSPs)
chr6 (20-457)||(11170803-11171240)
chr6 (29-407)||(11209634-11210012)
chr6 (23-390)||(11196959-11197326)
chr6 (29-395)||(11276196-11276562)
chr6 (23-410)||(11156506-11156895)
chr6 (26-390)||(11241005-11241375)
chr6 (23-289)||(11200124-11200394)
chr6 (23-289)||(11161373-11161651)
chr6 (23-386)||(11133230-11133593)
chr6 (527-597)||(11171312-11171382)
chr6 (544-589)||(8382104-8382149)
[»] scaffold1207 (1 HSPs)
scaffold1207 (23-456)||(1121-1538)
[»] chr7 (22 HSPs)
chr7 (26-104)||(8382727-8382805)
chr7 (26-104)||(8602213-8602291)
chr7 (23-104)||(13333307-13333388)
chr7 (23-103)||(10494226-10494306)
chr7 (23-103)||(8585558-8585638)
chr7 (531-590)||(2407345-2407404)
chr7 (23-102)||(8628768-8628847)
chr7 (544-590)||(7875716-7875762)
chr7 (23-97)||(27830733-27830807)
chr7 (30-92)||(29577532-29577594)
chr7 (23-104)||(8654686-8654767)
chr7 (23-104)||(8667655-8667736)
chr7 (24-104)||(6789749-6789829)
chr7 (23-103)||(8671482-8671562)
chr7 (530-590)||(40352657-40352717)
chr7 (30-104)||(3147515-3147589)
chr7 (26-104)||(7877584-7877662)
chr7 (26-104)||(8538275-8538353)
chr7 (215-323)||(8647305-8647410)
chr7 (544-586)||(41415672-41415714)
chr7 (272-381)||(3147757-3147866)
chr7 (264-334)||(8640170-8640237)
[»] scaffold0734 (2 HSPs)
scaffold0734 (536-590)||(1908-1962)
scaffold0734 (353-407)||(6714-6770)
[»] chr4 (3 HSPs)
chr4 (24-104)||(9335742-9335822)
chr4 (24-103)||(30775489-30775568)
chr4 (23-104)||(35132684-35132765)
[»] chr2 (4 HSPs)
chr2 (23-104)||(7542462-7542543)
chr2 (23-103)||(16661844-16661924)
chr2 (23-104)||(16657368-16657449)
chr2 (23-103)||(14703644-14703724)
[»] chr5 (1 HSPs)
chr5 (544-588)||(5003527-5003571)
[»] chr1 (3 HSPs)
chr1 (264-322)||(15595516-15595571)
chr1 (23-103)||(34466645-34466725)
chr1 (545-590)||(33096059-33096104)
[»] chr8 (1 HSPs)
chr8 (544-590)||(18896459-18896505)


Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 457
Target Start/End: Original strand, 11170803 - 11171240
Alignment:
Q  20 caagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11170803 caagtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgt 11170902  T
Q  120 tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| | | ||| |||||||||  ||||||  |||||||||| |    
T  11170903 tgtgagtcattaaagtatgcaggcacagttataacaacatcctccactattgatccaaggaaggtttctgctatctcgcgcattttcaccaataccatgg 11171002  T
Q  220 atgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaa 319  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11171003 atgagatttcttcagcagcaaaatgtttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaa 11171102  T
Q  320 cttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgnnnnnnnnt 419  Q
    ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |    
T  11171103 cttcacatcactttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaacaat 11171202  T
Q  420 tggatcgctttatgaattaatcattctatgtggatttg 457  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11171203 tggatcgctttatgaattaatcattctatgtggatttg 11171240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 29 - 407
Target Start/End: Original strand, 11209634 - 11210012
Alignment:
Q  29 gccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtca 128  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11209634 gccatatgcaattgcagctgcagtaggctcattgagtattcgcaaaacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtca 11209733  T
Q  129 ttaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatattt 228  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||| | ||||| ||| ||||   |||||| ||||||||||| ||||| ||||    
T  11209734 ttaaagtatgcaggcacagttataacaacatcatccactgttgatccaaggaaggcttctgctgtctctcgcattttcgccaataccatggatgagattt 11209833  T
Q  229 cttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatc 328  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  11209834 cttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcatttaggtcgccaattactttgaatggccacaacttcacatc 11209933  T
Q  329 actttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact 407  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11209934 actttctactatggggtcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacact 11210012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 390
Target Start/End: Original strand, 11196959 - 11197326
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgt 122  Q
    |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  11196959 gtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatctcgagtggactggcgttgt 11197058  T
Q  123 gagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatg 222  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11197059 gagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatg 11197158  T
Q  223 atatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaactt 322  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| ||||    
T  11197159 agatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattgaggtcgccaattactttgaagggccacgactt 11197258  T
Q  323 cacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaa 390  Q
    || |||||||||||| || |  |||||||| |||| ||||||||||||||||||||||||||||||||    
T  11197259 catatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaa 11197326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 29 - 395
Target Start/End: Original strand, 11276196 - 11276562
Alignment:
Q  29 gccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgagtca 128  Q
    ||||||||||||||||||||||||||||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||    
T  11276196 gccatatgcaattgcagctgcagtaggctcatttattattcgcataacgtttaggccagcaatagcacccgcatctcgagtagactggcgctgtgagtca 11276295  T
Q  129 ttaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgatattt 228  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||| | ||||| |||||||||  |||||| ||||||||||| ||||| ||||    
T  11276296 ttaaagtatgcaggcacagttataacaacatcctccactgttaatccaaggaaggcttctgctatctcgcgcattttcgccaataccatggatgagattt 11276395  T
Q  229 cttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatc 328  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11276396 cttcagcagtaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatc 11276495  T
Q  329 actttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagaga 395  Q
    |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  11276496 actttgtactatgggatcactaaatttccgaccaattagcctctttgcatctacaaaacaaaagaga 11276562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 23 - 410
Target Start/End: Original strand, 11156506 - 11156895
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgt 122  Q
    |||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||    
T  11156506 gtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcataacattgaggccagcaataacacccgcatcttgggtggactggcgttgt 11156605  T
Q  123 gagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatg 222  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11156606 gagtcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaaacttcagctatctcggccatttttgccaataccatcgatg 11156705  T
Q  223 atatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaactt 322  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||| |||||| ||||    
T  11156706 agatttcttcagcagcaaaatgcttttcctcgtctttatagttaacaacaatcatgggtttgtcattgaggttgccaattactttgaagggccacgactt 11156805  T
Q  323 cacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaa--aagagagttgtgtacactatg 410  Q
    || |||||||||||| || |  |||||||| |||| |||||||||||||||||||||||||||||||  || ||||||| ||||||||||    
T  11156806 catatcactttgtacgattgagtcgcaaaacttcctaccaattagcctctttgcatctacaaaacaaacaaaagagttgagtacactatg 11156895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 26 - 390
Target Start/End: Complemental strand, 11241375 - 11241005
Alignment:
Q  26 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgtgag 125  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||| || ||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  11241375 aaggccatatgcaattgcaactgcagtaggctcagtgattattcacaaaactttgaggccagcaatagcacccgcatctcgaatagactggcgttgtgag 11241276  T
Q  126 tcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatgata 225  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  11241275 tcattaaagtaagcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatcttggccatttttgccaataccatcgatgaga 11241176  T
Q  226 tttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcac 325  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||||||||| |||||||||||||     
T  11241175 tttcttcagcagcgaaatgcttttcctcgtcattatagttaacaatagtcatgtgtttgtcattcaggtcgccaattactttgaagggccacaacttcat 11241076  T
Q  326 atcactttgtactatgggatcgca------aaatttccgaccaattagcctctttgcatctacaaaacaaa 390  Q
    |||||||||||  ||||| || ||      ||| |||| ||||||||||||||||||||||||||||||||    
T  11241075 atcactttgtatgatggggtcacaaaacttaaacttcctaccaattagcctctttgcatctacaaaacaaa 11241005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 11200124 - 11200394
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgt--- 119  Q
    |||||| |||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||       
T  11200124 gtcaagaccatatgcaattgcagctgcagaaggctcattgattattcgcaaaacattgaggccagcaatagcacccgcatctcaagtagactggcgtacg 11200223  T
Q  120 -tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatc 218  Q
     ||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||     
T  11200224 ttgtgaatcattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtcaataccatg 11200323  T
Q  219 gatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcatt 289  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11200324 gatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcatt 11200394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 23 - 289
Target Start/End: Original strand, 11161373 - 11161651
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggct--------cattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagact 114  Q
    |||||| ||||||||||||||| ||||||||||||        |||||| || |||||||||||| |||||| |||||||||||||||||||||||||||    
T  11161373 gtcaagaccatatgcaattgcatctgcagtaggctagtagagtcattgattactcgcataacattaaggccaacaatagcacccgcatctcgagtagact 11161472  T
Q  115 ggcgt----tgtgagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgcca 210  Q
    |||||    |||||  |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||    
T  11161473 ggcgtacgttgtgaaacattaaagtatgtaggcacaattataacaacatccttcactgttgatccaaggtaagcttcagcaatctcgcccatttttgtca 11161572  T
Q  211 ataccatcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcatt 289  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11161573 ataccatggatgagatttcttctgcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcatt 11161651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 23 - 386
Target Start/End: Original strand, 11133230 - 11133593
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgt 122  Q
    |||||| |||||||||||||||||||| |||||||| |||| |||||||||||| ||||| || |||||| |||| ||||||| |||||  ||||||||     
T  11133230 gtcaagaccatatgcaattgcagctgctgtaggctcgttgattattcgcataacgttgagacctgcaataacacctgcatctctagtagcttggcgttgc 11133329  T
Q  123 gagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatg 222  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |||| || |||||    ||||||| ||||||||| ||||    
T  11133330 gagtcattaaagtaagcaggaacagttataacgacatccttcactgttgatccaaggtaaacttctgcaatctcacgaatttttgtcaataccattgatg 11133429  T
Q  223 atatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaactt 322  Q
    ||||||| |||||||||||||| ||||||||  |||| || || ||||||||  ||||||||||||| | | ||||||||||||| ||||||||||| ||    
T  11133430 atatttcctcagcagcaaaatgtttttcctctccattgtaattgacaacaatattgggtttgtcatttatgccaccaattactttaaatggccacaattt 11133529  T
Q  323 cacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaa 386  Q
    || |||||| || ||||| || || | |||||  | |||||| |||||||| ||||||||||||    
T  11133530 catatcactctgaactatagggtcactaaattctctaccaatgagcctcttcgcatctacaaaa 11133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 527 - 597
Target Start/End: Original strand, 11171312 - 11171382
Alignment:
Q  527 ttaaccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagctcctatg 597  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11171312 ttaaccccgtaagtaatacaatcttgggattttggtcccttataaaaaacaataacaaatcagctcctatg 11171382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 544 - 589
Target Start/End: Original strand, 8382104 - 8382149
Alignment:
Q  544 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcag 589  Q
    |||||||||  |||||| |||||| |||||||||||||||||||||    
T  8382104 acaatcttgcaattttgatcccttataaaaaacaataacaaatcag 8382149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 23 - 456
Target Start/End: Original strand, 1121 - 1538
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatctcgagtagactggcgttgt 122  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |||||||||    
T  1121 gtcaaagccatatgcaattgcagctgcagtaggctcattgagtattcccaaaacattgaggccagcaatagcacctgcatctcgagtagattggcgttgt 1220  T
Q  123 gagtcattaaagtatgcaggcacagttataacaacatccttcactgttgatccaaggtaagcttcagctatctcggccatttttgccaataccatcgatg 222  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||| ||| |||||  |||||| ||||||||||| ||||    
T  1221 gagtcattaaagtatgcaggcacagttataacaacatcctccactgttgatccaaggaaggcttctgctgtctcgcgcattttcgccaataccatggatg 1320  T
Q  223 atatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaactt 322  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |                   | ||||||||||||||||    
T  1321 agatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttat------------------gtatgaatggccacaactt 1402  T
Q  323 cacatcactttgtactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatg--nnnnnnnntt 420  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  1403 cacatcactttctactatgggatcgcaaaatttccgaccaattagcctctttgcatctacaaaacaaaagagagttgtgtacactatgaaaaaaacaatt 1502  T
Q  421 ggatcgctttatgaattaatcattctatgtggattt 456  Q
    | ||||||||||| |||||||||| |||||||||||    
T  1503 gtatcgctttatgtattaatcattttatgtggattt 1538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 8382805 - 8382727
Alignment:
Q  26 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    ||||||||||||||  ||||| ||||| |||||||||| ||| ||||| ||||||||||||||||| ||||| ||||||    
T  8382805 aaggccatatgcaagagcagcggcagttggctcattgattatccgcattacattgaggccagcaatcgcaccagcatct 8382727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 8602213 - 8602291
Alignment:
Q  26 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    ||||||||||||||  ||||||||||| |||||||||| ||| ||||| |||||||| |||||||| ||||| ||||||    
T  8602213 aaggccatatgcaagagcagctgcagttggctcattgattatccgcattacattgagaccagcaatggcaccagcatct 8602291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 13333388 - 13333307
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    |||||||||||||||||| || || |||||||| ||||||| |||||| || | ||| ||||||||||||||||| ||||||    
T  13333388 gtcaaggccatatgcaatagctgcagcagtaggttcattgattattcgaatgatattaaggccagcaatagcaccagcatct 13333307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 10494306 - 10494226
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 103  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||||||| |||||    
T  10494306 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagcaccagcatc 10494226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 8585638 - 8585558
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 103  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| |||||    
T  8585638 gtcaaggccatatgcaatagctgcagcagtgggttcattgattatcctcataacattaaggccagcaatggcaccagcatc 8585558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 590
Target Start/End: Original strand, 2407345 - 2407404
Alignment:
Q  531 ccccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 590  Q
    |||| ||||||  ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  2407345 ccccctaagtatcacaatcttgcgattttggtcccctataaaaaacaataacaaatcagc 2407404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 8628768 - 8628847
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcat 102  Q
    |||||||||||||||||| || || ||||| || ||||||| ||| | ||||||||| ||||||||||| ||||| ||||    
T  8628768 gtcaaggccatatgcaatagctgcagcagtggggtcattgattatcctcataacattaaggccagcaatggcaccagcat 8628847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 544 - 590
Target Start/End: Original strand, 7875716 - 7875762
Alignment:
Q  544 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 590  Q
    ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  7875716 acaatcttgcgattttggtcccctataaaaaacaataacaaatcagc 7875762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 27830807 - 27830733
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacc 97  Q
    |||||||||||||||||| || || |||||||||||  | | ||| ||||||||||| ||||||||||| |||||    
T  27830807 gtcaaggccatatgcaatagctgcagcagtaggctcgcttattatccgcataacattaaggccagcaatggcacc 27830733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 29577594 - 29577532
Alignment:
Q  30 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaata 92  Q
    |||||||||| |||||| ||||| || ||||||| ||| ||||| ||||||||||||||||||    
T  29577594 ccatatgcaagtgcagcagcagttggttcattgattatccgcattacattgaggccagcaata 29577532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 8654686 - 8654767
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    |||||||||||||||||| || || |||||||| ||||||||||| || || || || || |||||||| ||||| ||||||    
T  8654686 gtcaaggccatatgcaatagctgcggcagtaggttcattgagtatccgaatgacgttaagtccagcaatggcaccagcatct 8654767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 8667655 - 8667736
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| ||||||    
T  8667655 gtcaaggccatatgcaatagctgccgcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatct 8667736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 104
Target Start/End: Original strand, 6789749 - 6789829
Alignment:
Q  24 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    ||||||||||||||||  ||||| || || || ||||||| |||||| |||||||| || |||||||| ||||| ||||||    
T  6789749 tcaaggccatatgcaagagcagcagctgttggttcattgattattcgtataacattaagaccagcaatggcaccagcatct 6789829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 8671562 - 8671482
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 103  Q
    |||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| || |||||||||| ||| |||||    
T  8671562 gtcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaagtccagcaatagtaccagcatc 8671482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 530 - 590
Target Start/End: Original strand, 40352657 - 40352717
Alignment:
Q  530 accccgtaagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 590  Q
    ||||| ||||||  ||||||||| |||||||||| | | ||||||||||||||||||||||    
T  40352657 accccctaagtatcacaatcttgcgattttggtcgcctataaaaaacaataacaaatcagc 40352717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 3147515 - 3147589
Alignment:
Q  30 ccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    ||||| ||||| || || |||||||| ||||||| ||| ||||||| ||| |||||||||||| |||| ||||||    
T  3147515 ccatacgcaatagctgcagcagtaggttcattgattatccgcataatattaaggccagcaataacaccagcatct 3147589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 104
Target Start/End: Complemental strand, 7877662 - 7877584
Alignment:
Q  26 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    ||||||||||||||  ||||| ||||| || ||||| | ||| ||||||||||||||||| ||||  ||||| ||||||    
T  7877662 aaggccatatgcaagggcagcagcagttggttcattaattatccgcataacattgaggccggcaactgcaccagcatct 7877584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 104
Target Start/End: Original strand, 8538275 - 8538353
Alignment:
Q  26 aaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    |||||| |||||||  ||||| || ||||| ||||||| ||| ||||| |||||||||||||||||  |||| ||||||    
T  8538275 aaggccgtatgcaagagcagcagctgtaggttcattgattatccgcattacattgaggccagcaatgacaccagcatct 8538353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 323
Target Start/End: Original strand, 8647305 - 8647410
Alignment:
Q  215 catcgatgatatttcttcagcagcaaaatgcttttcctcgtcattatagttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggc 314  Q
    ||||||||||||||| ||||||  | || |||| || ||  | || || ||||||| ||||||||||||||||||||   | ||||| || |||||||||    
T  8647305 catcgatgatatttcctcagcacaataacgcttctcttcacccttgtatttaacaataatcatgggtttgtcattca---ccccaatgaccttgaatggc 8647401  T
Q  315 cacaacttc 323  Q
    |||||||||    
T  8647402 cacaacttc 8647410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 544 - 586
Target Start/End: Original strand, 41415672 - 41415714
Alignment:
Q  544 acaatcttgggattttggtcccttgtaaaaaacaataacaaat 586  Q
    ||||||||| |||||||| ||||| ||||||||||||||||||    
T  41415672 acaatcttgcgattttggccccttataaaaaacaataacaaat 41415714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 381
Target Start/End: Original strand, 3147757 - 3147866
Alignment:
Q  272 aatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttgtactatgggatcgcaaaatttccgaccaattagcctc 371  Q
    ||||||||||||||||||||   | | ||| || ||||||||||||||| ||| |||| |||| || |  | ||| | ||| |||| |||||||| ||||    
T  3147757 aatcatgggtttgtcattcactccgcaaatgaccttgaatggccacaacatcatatcattttgaacaacagaatcaccaaacttcctaccaattaacctc 3147856  T
Q  372 tttgcatcta 381  Q
    ||||||||||    
T  3147857 tttgcatcta 3147866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 8640237 - 8640170
Alignment:
Q  264 ttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaacttcacatcactttg 334  Q
    ||||||| |||| |||||||||||||||   | ||||| || ||||||||||||||||||| |||| ||||    
T  8640237 ttaacaataatcgtgggtttgtcattca---ccccaatgaccttgaatggccacaacttcatatcattttg 8640170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 536 - 590
Target Start/End: Original strand, 1908 - 1962
Alignment:
Q  536 taagtaatacaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 590  Q
    ||||||| ||||||||| |||||||||||| | ||||||||||||||||||||||    
T  1908 taagtaacacaatcttgagattttggtcccctataaaaaacaataacaaatcagc 1962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 407
Target Start/End: Original strand, 6714 - 6770
Alignment:
Q  353 tttccgaccaattagcctctttgcatctacaaaacaaa-ag-agagttgtgtacact 407  Q
    ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||    
T  6714 tttccaaccaattagcctctttgcatctacaaaacaaacagaagagttgtgtacact 6770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 9335822 - 9335742
Alignment:
Q  24 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    ||||||||||||||||| || || |||||||| ||||||| ||| || || ||||| ||||||||||||| ||| ||||||    
T  9335822 tcaaggccatatgcaatagctgcagcagtaggttcattgattatccgaatgacattaaggccagcaatagtaccagcatct 9335742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 30775489 - 30775568
Alignment:
Q  24 tcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 103  Q
    ||||| ||||||||||| || |||||||| |||||||| | ||||| ||||||||| || |||||||| ||||| |||||    
T  30775489 tcaagtccatatgcaatagctgctgcagtgggctcattaattattctcataacattaagaccagcaatggcaccagcatc 30775568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 35132684 - 35132765
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    |||||||||||||||||  || || |||||||| ||||| | || || |||||||||| | |||||||||||||| ||||||    
T  35132684 gtcaaggccatatgcaaccgctgcggcagtaggttcattcattactctcataacattgggaccagcaatagcaccagcatct 35132765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 7542462 - 7542543
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    |||||||||||||||||  || || |||||||| ||||| | |   | ||||||||||||||||||||| ||||||||||||    
T  7542462 gtcaaggccatatgcaacagctgcggcagtaggttcattcattgccctcataacattgaggccagcaatggcacccgcatct 7542543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 16661924 - 16661844
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 103  Q
    |||||||||||||||||| || |||||||| || ||||||| ||| | || ||| || ||||||||||| ||||| |||||    
T  16661924 gtcaaggccatatgcaatagctgctgcagtgggttcattgattatcctcacaacgttaaggccagcaatggcaccagcatc 16661844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 16657449 - 16657368
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatct 104  Q
    |||||| ||||||||||| || || |||||||| |||||||  ||||| || ||||| |||||||| || ||||| ||||||    
T  16657449 gtcaagaccatatgcaatagctgcagcagtaggttcattgataattcgaatgacattaaggccagcgatggcaccagcatct 16657368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 14703644 - 14703724
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 103  Q
    |||||||||||||||||| || || || ||||| ||||| | ||  | ||||||||||||||| |||||| |||| |||||    
T  14703644 gtcaaggccatatgcaatagctgcagctgtaggttcattcattaccctcataacattgaggccggcaataacaccagcatc 14703724  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 544 - 588
Target Start/End: Original strand, 5003527 - 5003571
Alignment:
Q  544 acaatcttgggattttggtcccttgtaaaaaacaataacaaatca 588  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||    
T  5003527 acaatcttgcgattttgatcccttataaaaaacaataacaaatca 5003571  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 15595516 - 15595571
Alignment:
Q  264 ttaacaacaatcatgggtttgtcattcaggtcaccaattactttgaatggccacaactt 322  Q
    ||||||| ||||||||||||||||||||   ||||||| || |||||||||||||||||    
T  15595516 ttaacaataatcatgggtttgtcattca---caccaatgaccttgaatggccacaactt 15595571  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 34466725 - 34466645
Alignment:
Q  23 gtcaaggccatatgcaattgcagctgcagtaggctcattgagtattcgcataacattgaggccagcaatagcacccgcatc 103  Q
    |||||| ||||||||||| || || ||||| || ||||||| |||| ||| |||||| ||||||||||||| ||| |||||    
T  34466725 gtcaagtccatatgcaatagctgcagcagtgggttcattgattatttgcaaaacattaaggccagcaatagtaccagcatc 34466645  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 545 - 590
Target Start/End: Original strand, 33096059 - 33096104
Alignment:
Q  545 caatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 590  Q
    ||||||||  ||||||||||||| ||||||| ||||||||||||||    
T  33096059 caatcttgcaattttggtcccttataaaaaataataacaaatcagc 33096104  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 544 - 590
Target Start/End: Original strand, 18896459 - 18896505
Alignment:
Q  544 acaatcttgggattttggtcccttgtaaaaaacaataacaaatcagc 590  Q
    ||||||||| |||||||||||| | ||||||||||||| ||||||||    
T  18896459 acaatcttgcgattttggtcccctataaaaaacaataataaatcagc 18896505  T

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