View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_high_12 (Length: 379)
Name: NF6295_high_12
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 41169991 - 41170353
Alignment:
| Q |
10 |
attatactctttacaaagaaaaagacaa-taaattttttagaatattttgagttcatatatattcctcccacactttcacaatcacatgtaactttattt |
108 |
Q |
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| T |
41169991 |
attatactctttacaaagaaaaagacaaataaatttt--agaatattttgagttcatatatattcctcccacgctttcacaatcacatgtaactttattt |
41170088 |
T |
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| Q |
109 |
catgatttaccatatcctacaagtgctttttaaatagagcaccaaaagttcaacagggtctgaaatgggcagcataaagaatgtgcctgtggtgatgatg |
208 |
Q |
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| T |
41170089 |
catgatttaccatatcctacaagtgctttttaaatagagcaccaaaagttcaacagggtctgaaatgggcagcataaagaatgtgcctgtggtgatgatg |
41170188 |
T |
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| Q |
209 |
aaaattttatcctatttagagtctgatacattataaatggattaaaccttttgaaaagtg-------------acttgttgtccacnnnnnnngttgcag |
295 |
Q |
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| T |
41170189 |
aaaattttatcctatttagagtctgatacattataaatggattaaaccttttgaaaagtgacttgttggaagtacttgttgtccactttttttgttgcag |
41170288 |
T |
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| Q |
296 |
tatgcataaaatacttgttactctttaggaaattagtaacaattatctacctagaagtttaagtt |
360 |
Q |
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| T |
41170289 |
tatgcataaaatacttgttactctttaggaaattagtaacaattatctacctagaagtttaagtt |
41170353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 207
Target Start/End: Original strand, 41168270 - 41168359
Alignment:
| Q |
119 |
catatcctacaagtgctttttaaatagagcaccaaaag-ttcaaca-gggtctgaaatgggcagcataaagaatgtgcctgtggtgatgat |
207 |
Q |
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| T |
41168270 |
catatcctagaagtgcttttgaa-tagagcactaaaatattcaaaaagggtctaaaatggccagcataaagaacgtgcctgtggtgatgat |
41168359 |
T |
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