View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_high_20 (Length: 298)
Name: NF6295_high_20
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 19398233 - 19397964
Alignment:
| Q |
18 |
caaagcttgacccgagagcttgtaccaccccattcatctaaggctccaccctctgttcccaagttgaatgattcaaatggggatccagactatgataaat |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19398233 |
caaagcttgacccgagagcttgttccaccccattcatctaaggctccaccctctgttcccaagttgaatgattcaaatggggatccagactatgataaac |
19398134 |
T |
|
| Q |
118 |
tgtagaagccacctccaaatcatgggttatgatccagaccatatgnnnnnnnnnnnnttccaacccactcacaaaacccaattctttctccctctcacct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19398133 |
tgtagaagccacctccaaatcatgggttatgatccagaccatatg--ctctctctcgttccaacccactcacaaaacccaattctttctccctctcacct |
19398036 |
T |
|
| Q |
218 |
cctcaaagcccatatatg-nnnnnnnnnccccaattctttcacaacagcaaaaccagtgttgacatcctttg |
288 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19398035 |
cctcaaagcccatatatgttttttttttccccaattctttcacaacagcaaaaccagtgttgacatcctttg |
19397964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 42794436 - 42794165
Alignment:
| Q |
18 |
caaagcttgacccgagagcttgtaccaccccattcatctaaggctccaccctctgttcccaagttgaatgattcaaatggggatccagactatgataaat |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42794436 |
caaagcttgacccgagagcttgttccaccccattcatctaaggctccaccctctgctcccaagttgaatgattcaaatggggatccagactatgagaaac |
42794337 |
T |
|
| Q |
118 |
tgtagaagccacctccaaatcatgggttatgatccagaccatatgnnnnnnnnnnnnttccaacccactcacaaaacccaattctttctccctctcacct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42794336 |
tgtagaagccacctccaaatcatgggttatgatccagacaatgtgctctctctctcgttccaacccactcacaaaacccaattctttctccctctcacct |
42794237 |
T |
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| Q |
218 |
cctcaaagcccatatatg-nnnnnnnnnccccaattctttcacaacagcaaaaccagtgttgacatcctttg |
288 |
Q |
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|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42794236 |
cctcaaagcccatatatgtttttttttcccccaattctttcgcaacagcaaaaccagtgttgacatcctttg |
42794165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 13510269 - 13510131
Alignment:
| Q |
18 |
caaagcttgacccgagagcttgtaccaccccattcatctaaggctccaccctctgttcccaagttgaatgattcaaatggggatccagactatgataaat |
117 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
13510269 |
caaagcttgacccgagagcttgttccaccccattcatttaaggctccaccctctgctcccaagttgaatgattcaaatggggatccagactatgagaaac |
13510170 |
T |
|
| Q |
118 |
tgtagaagccacctccaaatcatgggttatgatccagac |
156 |
Q |
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||| |||||||||||||||||||||||| |||| ||||| |
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| T |
13510169 |
tgtggaagccacctccaaatcatgggttgtgatacagac |
13510131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 45597206 - 45597140
Alignment:
| Q |
79 |
agttgaatgattcaaatggggatccagactatgataaattgtagaagccacctccaaatcatgggtt |
145 |
Q |
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||||||||||||||| |||||||||||||||||| ||| | | |||||||||||||||||||||||| |
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| T |
45597206 |
agttgaatgattcaagtggggatccagactatgagaaactatggaagccacctccaaatcatgggtt |
45597140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 45597645 - 45597583
Alignment:
| Q |
18 |
caaagcttgacccgagagcttgtaccaccccattcatctaaggctccaccctctgttcccaag |
80 |
Q |
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||||||| |||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
45597645 |
caaagctggacccgagagtttgttccaccccattcatctaaggctccaccctctgctcccaag |
45597583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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