View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_high_24 (Length: 284)
Name: NF6295_high_24
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_high_24 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 276
Target Start/End: Original strand, 33206111 - 33206371
Alignment:
| Q |
16 |
cgttatacaatctttattttatttcttccgaggtaaataaactaatatgttagtatcaatgttacaaaataatttgtgagcacatgcgtgcgtgcatgac |
115 |
Q |
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| T |
33206111 |
cgttatacggtctttagtttatttcttccgaggtaaataaaataatatgttagtatcaatgttacaaaataatttgtgagcgcatgcgtgcgtgcgtgac |
33206210 |
T |
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| Q |
116 |
ttataaagttgttcatccaaaagttgagagaaaacatggtcaaaaaaggttatctctcatatatttgttccattgattaaatttacatagaagatttacg |
215 |
Q |
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| T |
33206211 |
ttataaagttgttcatccaaaagttgagagaaaacatgatcaaaaaaggttatctctcatatatttgttccattgattaaatttacatagaagatttacg |
33206310 |
T |
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| Q |
216 |
atattagtgtatccgcatcatacactaaatttcatgcaatcgtgacatatctcttcatctc |
276 |
Q |
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| T |
33206311 |
atattattgtatccgcatcatacactaaatttcatgcaatcgtgacatatctcttcatctc |
33206371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 209
Target Start/End: Original strand, 33206783 - 33206973
Alignment:
| Q |
26 |
tctttattttatttcttccgaggtaaataaactaatatgttagtatcaatgttacaaaataatttgtgagcacatgcgtgcg------tgcatgacttat |
119 |
Q |
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| T |
33206783 |
tctttattgtctttcttccgaggcaaatcaactaatacattagtatcaatatcacaaaacaatttgtgtgggcgcgcgtgcgcgtatatgcgtgacttat |
33206882 |
T |
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| Q |
120 |
aaagttgttcatccaaaagttgagagaaaacatggtcaaaa--aaggttatctctcatatatttgttccattgattaaatttacatagaaga |
209 |
Q |
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| T |
33206883 |
aaaattattcatccaaaaacgggaagaaaacatggtgaaaaaaaaggttatttctcatata-ttatttcatcgattaaatttacatagaaga |
33206973 |
T |
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