View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_high_31 (Length: 252)
Name: NF6295_high_31
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 34505676 - 34505438
Alignment:
| Q |
1 |
cccagcttccaaagaacaaattacaattatttgacttttgtgctgttgctgggtgcatggatacaagtagagctatgctaaacagtgagagcaaaaacaa |
100 |
Q |
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| T |
34505676 |
cccagcttccaaagaacaaattacaattatttgacttttgtgctgttgctgggtgcatggatacaagtagagctatgctaaacagagagagcaaaaacaa |
34505577 |
T |
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| Q |
101 |
tgtatggacattgaaagccatatggtcctattctggtggtccaaaaactgtgaaagaatgaatattaacctgatatatgttctagttggtgtgtatatat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34505576 |
tgtatggacattcaaagccatatggtcctattctggtggtccaaaaactgtgaaagaatgaatattaacctgatatatgttctagttggtgtgtatatat |
34505477 |
T |
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| Q |
201 |
atagaaaatttagaaaaactagtgccatatgtggacttc |
239 |
Q |
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|||||||||||| |||||||||||||||||||||||||| |
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| T |
34505476 |
atagaaaatttataaaaactagtgccatatgtggacttc |
34505438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 34515423 - 34515303
Alignment:
| Q |
52 |
ggtgcatggatacaagtagagctatgctaaacagtgagagcaaaaacaatgtatggacattgaaagccatatggtcctattctggtggtccaaaaactgt |
151 |
Q |
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|||||||||||||||| ||||||| |||||| | ||||| ||||||||| |||||||||||||| |||||| |||||||| || |||||||||||||| |
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| T |
34515423 |
ggtgcatggatacaaggagagctaggctaaagaaagagaggaaaaacaatttatggacattgaaacccatattgtcctattttgagggtccaaaaactgt |
34515324 |
T |
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| Q |
152 |
gaaagaatgaatattaacctgat |
174 |
Q |
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|| ||| |||||||||| |||| |
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| T |
34515323 |
gacaga--gaatattaacttgat |
34515303 |
T |
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