View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_high_36 (Length: 248)
Name: NF6295_high_36
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 45394168 - 45393936
Alignment:
| Q |
1 |
gagtttgaggattcaaagtcagcagaaaattctccgacttgcaaagattacaatagacaatatgaggaggcacaaaagatgttggagacggaaaagaaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45394168 |
gagtttgaggattcaaagtcagcagaaaattctccgacttgcaaagattacaatagacaatatgaggaggcacaaaagatgttggagacggaaaagaaga |
45394069 |
T |
|
| Q |
101 |
aactagaagatgttcaaaatttggctaagattttcaacaagggtgactggtggaatgattcaattgatgatatgagtagtgatcagcttgaacaatttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45394068 |
aactagaagatgttcaaaatttggctaagattttcaacaagggtgactggtggaatgattcaattgatgatatgagtagtgatcagcttgaacaatttat |
45393969 |
T |
|
| Q |
201 |
ggtgtccatttacgagttaaggaggaagcttgt |
233 |
Q |
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| T |
45393968 |
ggtgtccatttacgagttaaggaggaagcttgt |
45393936 |
T |
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Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 52740779 - 52740601
Alignment:
| Q |
1 |
gagtttgaggattcaaagtcagcagaaaattctccgacttgcaaagattacaatagacaatatgaggaggcacaaaagatgttggagacggaaaagaaga |
100 |
Q |
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| T |
52740779 |
gagtttgaggattcaaaggtagcagaaaattttctgacctaccaagattacaatagacaatatgtggaggcacaaaagatgttggagatggaaaagaaga |
52740680 |
T |
|
| Q |
101 |
aactagaagatgttcaaaatttggctaagattttcaacaag---ggtgactggtggaatgattcaattgatgatatgag |
176 |
Q |
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| T |
52740679 |
aactagaagatgttcaaaatttggctaagattttcaacaagggtggtgattggtggaatgattcaattgatgatatgag |
52740601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 52740601 - 52740517
Alignment:
| Q |
149 |
ggtggaatgattcaattgatgatatgagtagtgatcagcttgaacaatttatggtgtccatttacgagttaaggaggaagcttgt |
233 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||||||||||||||||||| |
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| T |
52740601 |
ggtggaatgattcaattgatgatatgagtagtgatcaacttgaacaatttatgatatccatttatgagttaaggaggaagcttgt |
52740517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 13539351 - 13539187
Alignment:
| Q |
44 |
aagattacaatagacaatatgaggaggcacaaaagatgttggagacggaaaagaagaaactagaagatgttcaaaatttggctaagattttcaacaaggg |
143 |
Q |
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|||| |||||||||| ||||||||||||| ||| ||||||||| |||| ||||||||||||| ||||||||||||||| ||||| | |
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| T |
13539351 |
aagagtacaatagacgatatgaggaggcattaaaaatgttggagtcggagaagaagaaactagccgatgttcaaaatttg------------aacaaaag |
13539264 |
T |
|
| Q |
144 |
tgactggtggaatgattcaattgatgatatgagtagtgatcagcttgaacaatttatggtgtccatttacgagttaa |
220 |
Q |
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|| |||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||| | ||||||| |
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| T |
13539263 |
cgattggtggaatgattccattgatgatatgagtattgaagagcttgaacaatttatggaatccattaaagagttaa |
13539187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 35782182 - 35782411
Alignment:
| Q |
1 |
gagtttgaggattcaaagtcagcagaaaattctccgacttgcaaagattacaatagacaatatgaggaggcacaaaagatgttggagacggaaaagaaga |
100 |
Q |
| |
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|||||||| | |||||| ||| | | ||||||| |||| | |||||| ||||||| ||||||||||||||||| |||| ||||||| | |||||| ||| |
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| T |
35782182 |
gagtttgatgtttcaaactcaacgggaaattcttcgacctacaaagagtacaataaacaatatgaggaggcactaaaggtgttggaaatggaaaaacaga |
35782281 |
T |
|
| Q |
101 |
aactagaagatgttcaaaatttggctaagattttcaacaagggtgactggtggaatgattcaattgatgatatgagtagtgatcagcttgaacaatttat |
200 |
Q |
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|||| | |||||| |||||||| ||||||||| || | |||| ||||||||||||| || |||||||| |||| |||||||||||||||| ||||||| |
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| T |
35782282 |
aacttgctgatgttgaaaatttgactaagatttggaatatgggtaactggtggaatgaatctattgatgagatgaatagtgatcagcttgaagaatttat |
35782381 |
T |
|
| Q |
201 |
ggtgtccatttacgagttaaggaggaagct |
230 |
Q |
| |
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|| |||||||| ||||||| ||||||||| |
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| T |
35782382 |
ggagtccatttctgagttaaagaggaagct |
35782411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 49 - 211
Target Start/End: Original strand, 47836263 - 47836428
Alignment:
| Q |
49 |
tacaatagacaatatgaggaggcacaaaagatgttggagacggaaaagaagaaactagaagatgttcaaaatttggct---aagattttcaacaagggtg |
145 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||| || |||||||||||| ||||| | ||| |||||| ||| |||| || || |||| |
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| T |
47836263 |
tacaatagacaatatgaggaggcattaaagatgttagagttagagaagaagaaactaacagatgctgaaattttggcggccaagtttttgaagaaaggtg |
47836362 |
T |
|
| Q |
146 |
actggtggaatgattcaattgatgatatgagtagtgatcagcttgaacaatttatggtgtccattt |
211 |
Q |
| |
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| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
47836363 |
attggtggaatgattcaattgacaatatgagtagtgaagtgcttgaacaatttatggtgtccattt |
47836428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 9668327 - 9668163
Alignment:
| Q |
44 |
aagattacaatagacaatatgaggaggcacaaaagatgttggagacggaaaagaagaaactagaagatgttcaaaatttggctaagattttcaacaaggg |
143 |
Q |
| |
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|||| |||||||||| ||||||||||||| ||| ||||||||| |||| ||||||||||||| ||||||||||||||| ||||| | |
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| T |
9668327 |
aagagtacaatagacgatatgaggaggcattaaaaatgttggagtcggagaagaagaaactagccgatgttcaaaatttg------------aacaaaag |
9668240 |
T |
|
| Q |
144 |
tgactggtggaatgattcaattgatgatatgagtagtgatcagcttgaacaatttatggtgtccatttacgagttaa |
220 |
Q |
| |
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|| |||||||||||||| |||||||||||||||| ||| |||||||||||||||||| |||||| | ||||||| |
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| T |
9668239 |
cgattggtggaatgattccattgatgatatgagtattgaagagcttgaacaatttatggaatccattaaagagttaa |
9668163 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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