View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6295_high_37 (Length: 248)

Name: NF6295_high_37
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6295_high_37
NF6295_high_37
[»] chr4 (1 HSPs)
chr4 (8-180)||(56105158-56105333)
[»] chr1 (3 HSPs)
chr1 (55-143)||(2092807-2092895)
chr1 (83-136)||(44303289-44303342)
chr1 (105-137)||(14614823-14614855)
[»] chr3 (2 HSPs)
chr3 (83-143)||(11416219-11416279)
chr3 (83-143)||(9612442-9612502)
[»] scaffold0025 (1 HSPs)
scaffold0025 (64-151)||(50309-50396)
[»] chr5 (2 HSPs)
chr5 (83-136)||(41362585-41362638)
chr5 (105-133)||(18679428-18679456)
[»] chr8 (2 HSPs)
chr8 (105-137)||(11049706-11049738)
chr8 (105-137)||(11539203-11539235)
[»] chr7 (1 HSPs)
chr7 (105-137)||(2916332-2916364)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 56105333 - 56105158
Alignment:
Q  8 attatactcaaggtgagaaattggtggtttgaggtgaataat---ttgtaggggtgaatgggtgagattttgtacagattaaaattggtattttttatgg 104  Q
    |||||||||||| |||||||||||||||||||||||||| ||   |||||||||| |||| | ||||||||||| || |||||||||||||||||||||     
T  56105333 attatactcaagatgagaaattggtggtttgaggtgaatgatgatttgtaggggtaaatgagggagattttgtaaaggttaaaattggtattttttatga 56105234  T
Q  105 tttgtagggataaaggtataattgttggggtgtgaggtatattttccccaaagctactagttgtcattggaataat 180  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  56105233 tttgtagggataaaggtataattgttgaggtgtgaggtatattttccccaaagctactagctgtcattggaataat 56105158  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 2092807 - 2092895
Alignment:
Q  55 ggggtgaatgggtgagattttgtacagattaaaattggtattttttatggtttgtagggataaaggtataattgttggggtgtgaggta 143  Q
    |||||| | ||||| ||||||| | || ||||||| ||||||||| ||||||||||||| ||| ||||||||||| |||||||||||||    
T  2092807 ggggtggaagggtgtgattttgaaaaggttaaaataggtatttttgatggtttgtaggggtaagggtataattgtcggggtgtgaggta 2092895  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 44303289 - 44303342
Alignment:
Q  83 ttaaaattggtattttttatggtttgtagggataaaggtataattgttggggtg 136  Q
    ||||||||||||||| | |||||||||| |||||  |||||||| |||||||||    
T  44303289 ttaaaattggtatttatgatggtttgtaaggataggggtataatcgttggggtg 44303342  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 14614823 - 14614855
Alignment:
Q  105 tttgtagggataaaggtataattgttggggtgt 137  Q
    ||||||||||||| |||||||||||||||||||    
T  14614823 tttgtagggataatggtataattgttggggtgt 14614855  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 143
Target Start/End: Complemental strand, 11416279 - 11416219
Alignment:
Q  83 ttaaaattggtattttttatggtttgtagggataaaggtataattgttggggtgtgaggta 143  Q
    ||||||||||||||||||||  ||||||||| || ||| ||||||||||||||||||||||    
T  11416279 ttaaaattggtattttttataatttgtaggggtagagggataattgttggggtgtgaggta 11416219  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 9612442 - 9612502
Alignment:
Q  83 ttaaaattggtattttttatggtttgtagggataaaggtataattgttggggtgtgaggta 143  Q
    |||||||||||||| | |||||||| |||||||  ||| |||||||| ||||| |||||||    
T  9612442 ttaaaattggtattctctatggtttatagggatggaggaataattgtaggggtatgaggta 9612502  T

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Target: scaffold0025 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 50309 - 50396
Alignment:
Q  64 gggtgagattttgtacagattaaaattggtattttttatggtttgtagggataaaggtataattgttggggtgtgaggtatattttcc 151  Q
    ||||||||||||| | ||  |||||||| ||||||  ||||||| ||||| || |||||||||||||||||| || |||||| |||||    
T  50309 gggtgagattttggaaagggtaaaattgctattttcaatggtttataggggtagaggtataattgttggggtatggggtataatttcc 50396  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 41362585 - 41362638
Alignment:
Q  83 ttaaaattggtattttttatggtttgtagggataaaggtataattgttggggtg 136  Q
    |||||||| |||||||| ||||||||||| | ||  ||||||||||||||||||    
T  41362585 ttaaaattagtatttttgatggtttgtagaggtaggggtataattgttggggtg 41362638  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 133
Target Start/End: Original strand, 18679428 - 18679456
Alignment:
Q  105 tttgtagggataaaggtataattgttggg 133  Q
    |||||||||||||||||||||||||||||    
T  18679428 tttgtagggataaaggtataattgttggg 18679456  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 11049706 - 11049738
Alignment:
Q  105 tttgtagggataaaggtataattgttggggtgt 137  Q
    ||||||||||||| |||||||||||||||||||    
T  11049706 tttgtagggataagggtataattgttggggtgt 11049738  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 11539235 - 11539203
Alignment:
Q  105 tttgtagggataaaggtataattgttggggtgt 137  Q
    ||||||||||||| |||||||||||||||||||    
T  11539235 tttgtagggataagggtataattgttggggtgt 11539203  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 137
Target Start/End: Complemental strand, 2916364 - 2916332
Alignment:
Q  105 tttgtagggataaaggtataattgttggggtgt 137  Q
    ||||||||||||| |||||||||||||||||||    
T  2916364 tttgtagggataagggtataattgttggggtgt 2916332  T

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