View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_high_38 (Length: 248)
Name: NF6295_high_38
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 42079751 - 42079988
Alignment:
| Q |
1 |
ataaaaatcacaataaattttacatctgtgagatttaaattaaagcaataaccaagagtataaaaactagcattagtt--atttggtaaagttaactcga |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
42079751 |
ataaaaatcacaataaattttacatctgtgagatttaaattaaagcaataaccaagagtataaaaactagcattagttgtatttggtaaagttaactcga |
42079850 |
T |
|
| Q |
99 |
agacttttcaagggattgaatttatttttggttcagtatgtactgcaatgactaacaatgtctttttcaatgtacttctnnnnnnntgtatttttcaatg |
198 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42079851 |
agacttttcaagggattgaatttatttttgattcagtatgtactgcaatgactaacaatgtctttttcaatgtacttctaaaaaaatgtatttttcaatg |
42079950 |
T |
|
| Q |
199 |
tgaataaataaactatttgcaataaacacataatccat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
42079951 |
tgaataaataaactatttgcaataaacacataatccat |
42079988 |
T |
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