View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_high_4 (Length: 483)
Name: NF6295_high_4
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 43439707 - 43440183
Alignment:
| Q |
1 |
agaagtttctgatattatatacnnnnnnnaagttataatggagattcacttgatgagtgccctatcaccataatttgtttacaattcaaaatttccgttc |
100 |
Q |
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|||| ||||||||||||||||| |||| ||||||||||||||||||| ||||| |||| | |||||||||||||| | |||| ||||| | ||| |
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| T |
43439707 |
agaattttctgatattatatacattttttaagtgataatggagattcacttgaagagtgacctagctccataatttgtttagagttcataattttctttc |
43439806 |
T |
|
| Q |
101 |
tttcttttggattcccaattataagcttaactttgtactgtgtccttggctatgtaactcataaatgtacattctcnnnnnnngcatgcatagtgtggct |
200 |
Q |
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||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43439807 |
tttcttttggattaccaattataagtttaactttgtactgtgtccttggctatgtaactcataaatgtacattctctttttttgcatgcatagtgtggct |
43439906 |
T |
|
| Q |
201 |
ttattttgctttaagctattttacatcattatattaattctgtgagtgttatcaagtttgttatttggtatcaagtatcaacatatatatcgtgactctt |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43439907 |
ttattttactttaagctattttacatcattatattaattctgtgagtgttatcaagtttgttatttggtatcaagtatcaacatatatattgtgactctt |
43440006 |
T |
|
| Q |
301 |
tataatatgagcatgtcggagattcatgtatatatcaacccaattggaaataggctttaacaaagaccaagagaggccattgtctcttctatgagtggtg |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43440007 |
tataatatgagcatgtcggagattcatgtatatatcaacccaattggaaataggctttaacaaagaccaagagaggtcattgtctcttctatgagtggtg |
43440106 |
T |
|
| Q |
401 |
tattgatcctgtattttgcattggtaggccgtaggcatgcgttcccttgagcttcctttgtttttcctctctgctcc |
477 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43440107 |
tattgatcctgtattttgcattggtagggcgtaggcatgcgttcccttgagcttcctttgtttttcctctcttctcc |
43440183 |
T |
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