View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_high_42 (Length: 239)
Name: NF6295_high_42
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_high_42 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35501238 - 35501462
Alignment:
| Q |
1 |
caacttctccccaattgcgcccgctaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactggtcaaacttacaacatcctg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35501238 |
caacttctccccaattgcgcccactaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactggtcaaacttacaacatcctg |
35501337 |
T |
|
| Q |
101 |
caaaatagaaaatatcaacataagaaatgatatgtgatgccaatctaagtcccagtcattaatatctatatctgtcaaaatgttaatcaaaggaacaaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35501338 |
caaaatagaaaatatcaacataagaaatgatatgtgatgccaatctaagtcccagtcattaatatctatatctgtcaaaatgttagtcaaaggaacaaac |
35501437 |
T |
|
| Q |
201 |
ataagaaaacaaaccagatatttga |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
35501438 |
ataagaaaacaaaccagatatttga |
35501462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 7070229 - 7070123
Alignment:
| Q |
1 |
caacttctccccaattgcgcccgctaacagaaagttgcttctcctttacagttattccaaaggtgttttggaaaaaactggtcaaacttacaacatcctg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| |||||||||||||| ||||| ||||| ||||||||||||| |
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| T |
7070229 |
caacttctccccaattgcgcccagtaacagaaagttgcttctccccaacagttactccgaaggtgttttggaagaaacttgtcaagcttacaacatccta |
7070130 |
T |
|
| Q |
101 |
caaaata |
107 |
Q |
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||||||| |
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| T |
7070129 |
caaaata |
7070123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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