View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_low_11 (Length: 393)
Name: NF6295_low_11
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 18 - 384
Target Start/End: Complemental strand, 52239408 - 52239042
Alignment:
| Q |
18 |
agtccttccatgataatttcacggtattccattgttaaattaaatatgttccgagtgttgaaatttttaccttcacgtgcttatgtggataagctcctga |
117 |
Q |
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| T |
52239408 |
agtccttccatgataatttcacggtattccattgttaaattaaatatgttccgagtgttgaaatttttaccttcacgtgcttatgtggataagctcctga |
52239309 |
T |
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| Q |
118 |
tttggaatttgcagatcgaagtattatcccaagatgagggtgatgtctcacagaaccaagaaattcaagaactccaagtaatttgcaacttacctacaca |
217 |
Q |
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| T |
52239308 |
tttggaatttgcagatcgaagtattatcccaagatgagggtgacgtctcacagaaccaagaaattcaagaactccaagtaatttgcaacttacctacaca |
52239209 |
T |
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| Q |
218 |
tgtttcatttttatcaacttgtagaagaataacgatattgagcatatatttctgtacacgatataggtcattgacaagaagatacaacaatggtctaaag |
317 |
Q |
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| T |
52239208 |
tgtttcatttttatcaacttgtagaagaataacgatattgagcatatatttctgtacacgatataggtcattgacaagaagatacaacaatggtctaaag |
52239109 |
T |
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| Q |
318 |
gaaaggaaggaaatatacgctcactgttgtcaacattacaatacgtaagaatatgtgtgtgtctgtg |
384 |
Q |
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| T |
52239108 |
gaaaggaaggaaatatacgctcactgttgtcaacattacaatacgtaagaatatgtgtgtgtctgtg |
52239042 |
T |
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