View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_low_15 (Length: 330)
Name: NF6295_low_15
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 34505706 - 34506030
Alignment:
| Q |
1 |
tcttcaacctgtcctttcgttgaagctcagtttgattgccaaaaatttggaagacctgataatcagtatcttaaatactcttggaagcctgattcatgtg |
100 |
Q |
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| T |
34505706 |
tcttcaagctgtcctttcgttgaagctcagtttgattgccaacaatttggaagacctgataatcagtatcttaaatactcttggaagcctgattcatgtg |
34505805 |
T |
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| Q |
101 |
ctttaccaaggtatttttagtttgtgtaaatgttcat--------atatatgtgacaattattattatgtaatataattagtgtactaaatatcttctca |
192 |
Q |
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| T |
34505806 |
atttaccaaggtatttttagtttgtataaatgttcatgttcatatatatatgtgacaattatcattttgtaatataattagtgtacttaatatcttctca |
34505905 |
T |
|
| Q |
193 |
taatgtattagtacaaatgtaatgagtaattattttatgtggtgt---aggttcaatggagaggatttcttgaataggtggaaggataagaagataatgt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34505906 |
taatgtattagtacaaatgtaatgagtaattatttt-tgtggtgtagcaggttcaatggagaggatttcttgaataggtggaaggataagaagataatgt |
34506004 |
T |
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| Q |
290 |
ttgtgggagattcattgagtctaaac |
315 |
Q |
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| T |
34506005 |
ttgtgggtgattcattgagtctaaac |
34506030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 144 - 315
Target Start/End: Original strand, 34515990 - 34516160
Alignment:
| Q |
144 |
gtgacaattattattatgtaatataattagtgtactaaatatcttctcataatgtattagtacaaatgtaatgagt-aattattttatgtggtgtaggtt |
242 |
Q |
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| T |
34515990 |
gtgacgattaatattttgtaatgtaattagtgtactaaatttcttctcctaatgtat-agtgcaaatgtaatgagtaaattatttt-tgtggtgtaggtt |
34516087 |
T |
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| Q |
243 |
caatggagaggatttcttgaataggtggaaggataagaagataatgtttgtgggagattcattgagtctaaac |
315 |
Q |
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| T |
34516088 |
caatggagaggatttcttgaataggtggaagggtaaaaagataatgtttgtgggtgattcattgagtctaaac |
34516160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 34515540 - 34515666
Alignment:
| Q |
1 |
tcttcaacctgtcctttcgttgaagctcagtttgattgccaaaaatttggaagacctgataatcagtatcttaaatactcttggaagcctgattcatgtg |
100 |
Q |
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||||||| ||| || ||| | |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34515540 |
tcttcaagctgccccttcttagaagctcaatttgattgccaaaaatttggaagacttgataatcagtatcttaaatactcttggaagcctgattcttgtg |
34515639 |
T |
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| Q |
101 |
ctttaccaaggtatttttagtttgtgt |
127 |
Q |
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| T |
34515640 |
ctttaccaaggtatttttagttagtgt |
34515666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 114
Target Start/End: Complemental strand, 4690691 - 4690612
Alignment:
| Q |
35 |
attgccaaaaatttggaagacctgataatcagtatcttaaatactcttggaagcctgattcatgtgctttaccaaggtat |
114 |
Q |
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|||| ||||| | ||||||||||||||| || || || |||||||||||||| |||||||||||||| |||||||||||| |
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| T |
4690691 |
attgtcaaaagtatggaagacctgataaacaatacctcaaatactcttggaaacctgattcatgtgccttaccaaggtat |
4690612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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