View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_low_16 (Length: 311)
Name: NF6295_low_16
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 17433520 - 17433228
Alignment:
| Q |
1 |
gaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17433520 |
gaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactg |
17433421 |
T |
|
| Q |
101 |
gatcaactctatacggacaggtaatttgcaatagttacatatagtataaattaaaaatcattcttaaatacttggattagatatcannnnnnnattggca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
17433420 |
gatcaactctatacggacaggtaatttgcaatagttacatatagtataaattaaaaatcattcttaaatacctggattagatatcatttttttattggca |
17433321 |
T |
|
| Q |
201 |
caactttattaaaaagtaagtatgaaagggtctaatcaatcatgattttgcgctctc--gagtgagagttttaccaatcattatggttctacc |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17433320 |
caactttattaaaaagtaagtatgaaagggtctaatcaatcatgattttgcgctctcttgagtgagagttttaccaatcattatggttctacc |
17433228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 17454599 - 17454320
Alignment:
| Q |
1 |
gaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |
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| T |
17454599 |
gagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactggtggctatgtgatctatgctgttgctcatcaacattcagggggagttg |
17454500 |
T |
|
| Q |
101 |
gatcaactctatacggacaggtaatttgcaatagttacatatagtataaattaaaaatcattcttaaatacttggattagatatcannnnnnnattggca |
200 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |||||| | | ||| |
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| T |
17454499 |
gatcaactttatatggacaggtaatttgcaatagttacatatagtataaatt-acaatcattcttaaa---------taaatatca-ttttttagtcgca |
17454411 |
T |
|
| Q |
201 |
caactttattaaaaagtaagtatgaaagggtctaatcaatcatgattttgcgctctc--gagtgagagttttaccaatcattatggttcta |
289 |
Q |
| |
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| ||||||||||||| ||| |||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17454410 |
cgactttattaaaaaataattatggaagcgtctaatcaatcatgattttgcgctctcttgagtgagagttttaccaatcattatggttcta |
17454320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 38226498 - 38226372
Alignment:
| Q |
6 |
aaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatca |
105 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||| ||||||| |
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| T |
38226498 |
aaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattggatca |
38226399 |
T |
|
| Q |
106 |
actctatacggacaggtaatttgcaat |
132 |
Q |
| |
|
||||||||||| |||||||||| |||| |
|
|
| T |
38226398 |
actctatacgggcaggtaatttacaat |
38226372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 38214119 - 38213986
Alignment:
| Q |
6 |
aaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatca |
105 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||| ||||||| |
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|
| T |
38214119 |
aaatggttgtgttcatgtgatgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatca |
38214020 |
T |
|
| Q |
106 |
actctatacggacaggtaatttgcaatagttaca |
139 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| |
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|
| T |
38214019 |
actctatatggacaggtaatttgcaatacttaca |
38213986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 38243017 - 38242881
Alignment:
| Q |
1 |
gaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| ||||| ||||||||||||| || |
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|
| T |
38243017 |
gaggaaaatgggtgtgttcatgtgaagaggacaagtctcccatttcaaactggtggatatgtgatctatggtgttgcacatcagcattcaggtggaattg |
38242918 |
T |
|
| Q |
101 |
gatcaactctatacggacaggtaatttgcaatagtta |
137 |
Q |
| |
|
|||| || ||||| ||||||||||||| ||||||||| |
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|
| T |
38242917 |
gatccaccctatatggacaggtaatttccaatagtta |
38242881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 38253370 - 38253236
Alignment:
| Q |
1 |
gaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactg |
100 |
Q |
| |
|
|||| |||||| ||||||||||| || ||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||| ||||||||||||| || |
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|
| T |
38253370 |
gagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaaaccggtggctatgtgatctatggtgttgctcatcagcattcaggtggaattg |
38253271 |
T |
|
| Q |
101 |
gatcaactctatacggacaggtaatttgcaatagt |
135 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||| |
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| T |
38253270 |
gatcaaccctatttggacaggtaatttgcaatagt |
38253236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 38220157 - 38220022
Alignment:
| Q |
6 |
aaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatca |
105 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| | ||||||||||| ||||||||||||| |||||| ||||||||||| ||||||| ||||| |
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|
| T |
38220157 |
aaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggttatgtgatctatggtgttgcacatcaacattcgggtggaatcggatcc |
38220058 |
T |
|
| Q |
106 |
actctatacggacaggtaatttgcaatagttacata |
141 |
Q |
| |
|
|| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
38220057 |
accctatatggacaggtaatttccaatagttacata |
38220022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 38238030 - 38237919
Alignment:
| Q |
13 |
tgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactctat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||||| ||| ||||||||| || |||||||||||||||||| |||| |||||||||||||| |
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|
| T |
38238030 |
tgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatatgatctatggtgctgctcatcaacattcaggcggaattggatcaactctat |
38237931 |
T |
|
| Q |
113 |
acggacaggtaa |
124 |
Q |
| |
|
| |||||||||| |
|
|
| T |
38237930 |
atggacaggtaa |
38237919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 38248217 - 38248165
Alignment:
| Q |
1 |
gaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactgg |
53 |
Q |
| |
|
|||| |||||| |||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
38248217 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccactacaatctgg |
38248165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 122
Target Start/End: Original strand, 11473504 - 11473615
Alignment:
| Q |
11 |
gttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaactct |
110 |
Q |
| |
|
||||||| |||| ||||| ||||| ||||| | |||| |||||| ||| | ||||||| |||| ||||||||||||||||| || |||||||||||| |
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|
| T |
11473504 |
gttgtgtcgatgtcaagagaacaagcttcccaatgcaaaatggtggttatctcatctatggagttggtcatcaacattcaggtgcaattggatcaactct |
11473603 |
T |
|
| Q |
111 |
atacggacaggt |
122 |
Q |
| |
|
||| ||| |||| |
|
|
| T |
11473604 |
atatggaaaggt |
11473615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 11485773 - 11485886
Alignment:
| Q |
9 |
tggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaacattcaggtggaactggatcaact |
108 |
Q |
| |
|
|||||||||| |||| || || |||| ||||| | |||| |||||| ||||| ||||||| |||| |||||| |||||||||| || |||||||||| |
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|
| T |
11485773 |
tggttgtgttgatgtcaaaagagcaagcttcccaatgcaaaatggtggttatgtcatctatggagttggtcatcagcattcaggtgcaattggatcaact |
11485872 |
T |
|
| Q |
109 |
ctatacggacaggt |
122 |
Q |
| |
|
||||| ||| |||| |
|
|
| T |
11485873 |
ctatatggaaaggt |
11485886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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