View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6295_low_19 (Length: 301)

Name: NF6295_low_19
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6295_low_19
NF6295_low_19
[»] chr6 (7 HSPs)
chr6 (1-286)||(6954589-6954874)
chr6 (1-224)||(6947950-6948173)
chr6 (1-224)||(6921420-6921643)
chr6 (1-224)||(6935288-6935511)
chr6 (69-224)||(6943092-6943247)
chr6 (75-148)||(20770503-20770576)
chr6 (74-164)||(24950272-24950362)
[»] chr7 (6 HSPs)
chr7 (1-224)||(1986025-1986248)
chr7 (73-225)||(15572052-15572204)
chr7 (69-224)||(13417061-13417210)
chr7 (78-221)||(14076475-14076618)
chr7 (78-221)||(14386503-14386646)
chr7 (69-168)||(18514946-18515045)
[»] chr5 (1 HSPs)
chr5 (76-194)||(18964978-18965096)
[»] chr2 (1 HSPs)
chr2 (91-136)||(14514748-14514793)
[»] chr4 (1 HSPs)
chr4 (99-168)||(53774685-53774754)


Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 6954589 - 6954874
Alignment:
Q  1 tgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggagcaaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954589 tgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggagcaaca 6954688  T
Q  101 actgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaataatatcggtgacggacaaccca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954689 actgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaataatatcggtgacggacaaccca 6954788  T
Q  201 attaatactattattcaaataaactttatctctcgcaaacattaaagaacgatgatacaccaattccaccgggaaacaatcaatat 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954789 attaatactattattcaaataaactttatctctcgcaaacattaaagaacgatgatacaccaattccaccgggaaacaatcaatat 6954874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6947950 - 6948173
Alignment:
Q  1 tgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggagcaaca 100  Q
    |||||||| ||||||||||  || ||||| |||||||||||||| ||||||||||||| | || |   ||||||||||||||||||||| ||||||||||    
T  6947950 tgggttttcttgaaatcatgtgaaaaacaaaggcaatccatcaacacagaaagagttggaacatcatgtagctcttcatcacaacatcgagggagcaaca 6948049  T
Q  101 actgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaataatatcggtgacggacaaccca 200  Q
    || |||||||| ||||||||| || |||||||||||| ||||||| || ||||||  |||||||||||||||||||||||||||||||||| |||  |||    
T  6948050 accgtgtatatctctctgtccccaaatcaagtgagatcatcacaagttgttcaaccataagattcttcaaatgacaataatatcggtgacgaacacacca 6948149  T
Q  201 attaatactattattcaaataaac 224  Q
    | |||||||| |||||||||||||    
T  6948150 actaatactactattcaaataaac 6948173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6921420 - 6921643
Alignment:
Q  1 tgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggagcaaca 100  Q
    |||||||| ||  |||||||||| ||| |||||||||||||||||||||||||||||| | ||     ||||||||||||||||||||| ||||||||||    
T  6921420 tgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaaca 6921519  T
Q  101 actgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaataatatcggtgacggacaaccca 200  Q
    | ||||||||||||||||||| || |||||||||||| |||||||||| ||||||  ||||||| ||||||||||||||||||| |  ||| |||  |||    
T  6921520 attgtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatatctgcaacgaacacacca 6921619  T
Q  201 attaatactattattcaaataaac 224  Q
    | ||| |||| | |||||||||||    
T  6921620 actaacactacttttcaaataaac 6921643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6935288 - 6935511
Alignment:
Q  1 tgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggagcaaca 100  Q
    |||||||| || ||||||||||| ||| ||||||||||||||||| |||||||||| | |   ||   ||||||||||||||||||||| ||||||||||    
T  6935288 tgggttttcttaaaatcataagaaaaatagaggcaatccatcaatccagaaagagtaggaaagccatgtagctcttcatcacaacatcgagggagcaaca 6935387  T
Q  101 actgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaataatatcggtgacggacaaccca 200  Q
    | | |||| |||||||||||| || |||||||||||| ||||| |||| ||| ||||||||||||||||||||||||| |||||||| ||| |||  |||    
T  6935388 attttgtacatgtctctgtccccaaatcaagtgagatcatcacgaattgttcgactgtaagattcttcaaatgacaattatatcggtaacgaacacacca 6935487  T
Q  201 attaatactattattcaaataaac 224  Q
    | |||||||| | |||||||||||    
T  6935488 actaatactacttttcaaataaac 6935511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 6943092 - 6943247
Alignment:
Q  69 tagctcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttc 168  Q
    ||||||||||||||||||| | ||||||||||| | ||||||||||||||||| || |||||||||||| ||||| |||| |||||||||||||||||||    
T  6943092 tagctcttcatcacaacattgagggagcaacaattttgtatatgtctctgtccccaaatcaagtgagatcatcacgaattgttcaactgtaagattcttc 6943191  T
Q  169 aaatgacaataatatcggtgacggacaacccaattaatactattattcaaataaac 224  Q
    |||||||||| |||||||||||| |||  |||| |||||||| | |||||||||||    
T  6943192 aaatgacaattatatcggtgacgaacacaccaactaatactacttttcaaataaac 6943247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 20770576 - 20770503
Alignment:
Q  75 ttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatt 148  Q
    ||||||||||||| | ||||| ||||||||| | ||||||||| ||  || |||||| ||||||||||||||||    
T  20770576 ttcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaagggagatgatcacaaatt 20770503  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 164
Target Start/End: Original strand, 24950272 - 24950362
Alignment:
Q  74 cttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagatt 164  Q
    |||||| | ||| ||| ||| ||||||| ||| | |||||||||||||||  |||||||||||||||| |||| || ||||| ||| ||||    
T  24950272 cttcattagaacctcgagggggcaacaattgtctgtatgtctctgtcctcgaatcaagtgagatgatcgcaaaattctcaacagtatgatt 24950362  T

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Target: chr7 (Bit Score: 124; Significance: 8e-64; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1986025 - 1986248
Alignment:
Q  1 tgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggagcaaca 100  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||| | ||||   ||| |||||||||||| |||| ||||||||||    
T  1986025 tgggttttcttgaaatcataagaaaaatagaggcaatccatcaacacagaaagagttggaacaccatgtagatcttcatcacaatatcgagggagcaaca 1986124  T
Q  101 actgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaataatatcggtgacggacaaccca 200  Q
    ||||||||||| ||||||||| || |||||||||||| || |||| || ||||||||||||||||||||||||||||| |||||||||||| |||  |||    
T  1986125 actgtgtatatctctctgtccccaaatcaagtgagataattacaagttgttcaactgtaagattcttcaaatgacaattatatcggtgacgaacacacca 1986224  T
Q  201 attaatactattattcaaataaac 224  Q
    | |||||||| |||||||||||||    
T  1986225 actaatactactattcaaataaac 1986248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 73 - 225
Target Start/End: Original strand, 15572052 - 15572204
Alignment:
Q  73 tcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaat 172  Q
    ||||||||||||||||| || |||| | | ||| ||||||| ||||||| || |||||| ||||| |||||||||| |||||  ||||||||||||||||    
T  15572052 tcttcatcacaacatcgaggtagcatcgattgtctatatgtttctgtccccaaatcaagcgagattatcacaaattgttcaatcgtaagattcttcaaat 15572151  T
Q  173 gacaataatatcggtgacggacaacccaattaatactattattcaaataaact 225  Q
    ||||||||||||| |||||| ||| ||||||| ||||||| ||||||||||||    
T  15572152 gacaataatatcgttgacgggcaaaccaattagtactattgttcaaataaact 15572204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 69 - 224
Target Start/End: Original strand, 13417061 - 13417210
Alignment:
Q  69 tagctcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttc 168  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||||| |||| ||  ||||  ||||| |||||||||| ||||| |||||      ||    
T  13417061 tagctcttcctcacaacatcgaggtagcaacaactgtgtatatgtctcagtccccaactcaaccgagataatcacaaattgttcaattgtaa------tc 13417154  T
Q  169 aaatgacaataatatcggtgacggacaacccaattaatactattattcaaataaac 224  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||| ||||||||    
T  13417155 aaatgacaattatatcggtgacgggcaaaccaattaatactattattgaaataaac 13417210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 14076618 - 14076475
Alignment:
Q  78 atcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaa 177  Q
    |||||||||| | ||||| ||||| |||||||||||||| |||| || |||||||||||| ||||||||||  ||||  || ||||| ||| |||||||     
T  14076618 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattccaatgacat 14076519  T
Q  178 taatatcggtgacggacaacccaattaatactattattcaaata 221  Q
      ||| ||||||||||| | |||| | | ||||||| |||||||    
T  14076518 gtataacggtgacggaccaaccaacttaaactattactcaaata 14076475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 78 - 221
Target Start/End: Complemental strand, 14386646 - 14386503
Alignment:
Q  78 atcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaa 177  Q
    |||||||||| | ||||| ||||| |||||||||||||| |||| || |||||||||||| ||||||||||  ||||  || ||||| ||| |||||||     
T  14386646 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattccaatgacat 14386547  T
Q  178 taatatcggtgacggacaacccaattaatactattattcaaata 221  Q
      ||| ||||||||||| | |||| | | ||||||| |||||||    
T  14386546 gtataacggtgacggaccaaccaacttaaactattactcaaata 14386503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 18514946 - 18515045
Alignment:
Q  69 tagctcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttc 168  Q
    |||||||| || |||| |||| |||||||| ||||||||||||||||||||| ||| |||||| ||||  || ||| ||| |||||  ||||||||||||    
T  18514946 tagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgagacaataacatattgttcaatggtaagattcttc 18515045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 18964978 - 18965096
Alignment:
Q  76 tcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgac 175  Q
    |||||||||||| | ||||| |||||||||||| |||||||  ||| || |||||||||||| ||||||||||  ||||  | |||| ||||   |||||    
T  18964978 tcatcacaacatggagggagtaacaactgtgtaaatgtctccatccccagatcaagtgagataatcacaaattgctcaatcgaaagaatcttttgatgac 18965077  T
Q  176 aataatatcggtgacggac 194  Q
    ||| ||| |||||||||||    
T  18965078 aattataacggtgacggac 18965096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 14514793 - 14514748
Alignment:
Q  91 gggagcaacaactgtgtatatgtctctgtcctcatatcaagtgaga 136  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||||    
T  14514793 gggagcaagaactgtgtatatgtctctgtcctcaaatcaagcgaga 14514748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 53774754 - 53774685
Alignment:
Q  99 caactgtgtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttc 168  Q
    ||||||||||||||||||||||  || |||||| || || |||||||||| |||   |||||||||||||    
T  53774754 caactgtgtatatgtctctgtctccaaatcaagcgaaataatcacaaattgttcggttgtaagattcttc 53774685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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