View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6295_low_2 (Length: 596)
Name: NF6295_low_2
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_low_2 |
 | |
|
| [»] scaffold0291 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 17 - 582
Target Start/End: Complemental strand, 7915294 - 7914726
Alignment:
| Q |
17 |
aatactagttcacatcctctttttgatattggtatggtatccagaattgatactaccaacatgttttctctacatgttcttgattggcttatggaactat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915294 |
aatactagttcacatcctctttttgatattggtatggtatccagaattgatactaccaacatgttttctctacatgttcttgattggcttatggaactat |
7915195 |
T |
|
| Q |
117 |
cggtttcgtccgagacaaccacctcacatggatactaaactctcatgggcagagtctgttcatccagatgaacttgacgaagagtttgacacatttccaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915194 |
cggtttcgtccgagacaaccacctcacatggatactaaactctcatgggcagagtctgttcatccagatgaacttgacgaagagtttgacacatttccaa |
7915095 |
T |
|
| Q |
217 |
catcaaggtcacatgatgcagtgagaatgaggtacgatagacttagaaccgttgcaggtaggattcaaacaattgttggcgacatagctacacaagggga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7915094 |
catcaaggtcacatgatgcagtgagaatgaggtacgatagacttagaaccgttgcaggtaggattcaaacaattgttggcgacatagctacacaagggga |
7914995 |
T |
|
| Q |
317 |
gaggtttatgtctctactgagctggagagaccctagaggaactacattgtttgtgttgtttagcctttgtgcagctgtgattttctatgcaacatcattt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
7914994 |
gaggtttatgtctctactgagctggagagaccctagaggaactacactgtttgtgttgtttagcctttgtgcagctgtgattttctatgcaacaccattt |
7914895 |
T |
|
| Q |
417 |
agagttgtggttttggtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgttccgagtaatttcttcaagaggctccctg |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7914894 |
agagttgtggttttggtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgttccgagtaatttcttcaagaggctccctg |
7914795 |
T |
|
| Q |
517 |
ctagaacagatagtttactgtaaatctgttgttttacaaataat---aataccatttcaatgatctgtg |
582 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
7914794 |
ctagaacagatagtttactgtaaatctgttgttttacaaataataataatatcatttcaatgatctgtg |
7914726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 21 - 582
Target Start/End: Original strand, 7834013 - 7834565
Alignment:
| Q |
21 |
ctagttcacatcctctttttgatattggtatggtatccagaattgatactaccaacatgttttctctacatgttcttgattggcttatggaactatcggt |
120 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||||||||||||||||| || || ||||||| ||||| ||||||||||||||| ||||||| | |
|
|
| T |
7834013 |
ctagttcacatcctctttttgatactgatatggtatccagaattgatactaccgacttgatttctcttcatgtccttgattggcttatgaaactatcaat |
7834112 |
T |
|
| Q |
121 |
ttcgtccgagacaaccacctcacatggatactaaactctcatgggcagagtctgttcatccagatgaacttgacgaagagtttgacacatttccaacatc |
220 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||| ||| || |||||||||| ||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
7834113 |
ttcgtcctcgacaaccgcctcacatggatactaaactctcatcggctgaatctgttcatcatgatgaacttgatggagagtttgacacatttccaacatc |
7834212 |
T |
|
| Q |
221 |
aaggtcacatgatgcagtgagaatgaggtacgatagacttagaaccgttgcaggtaggattcaaacaattgttggcgacatagctacacaaggggagagg |
320 |
Q |
| |
|
||| || ||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||| |||||||||| |||||||||| ||||||||||||| |
|
|
| T |
7834213 |
aagatcgcatgatgcagtgagaatgaggtatgataggctaagaactgttgcaggtaggattcaagcaattgttggtgacatagctatacaaggggagagg |
7834312 |
T |
|
| Q |
321 |
tttatgtctctactgagctggagagaccctagaggaactacattgtttgtgttgtttagcctttgtgcagctgtgattttctatgcaacatcatttagag |
420 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7834313 |
tttgtgtctctactgagctggagagacactagaggaactacactgtttatgttgtttagcctttgtgcagctgtgattttctatgcaacaccatttagag |
7834412 |
T |
|
| Q |
421 |
ttgtggttttggtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgttccgagtaatttcttcaagaggctccctgctag |
520 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
7834413 |
ttgtggttttagtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgtatcgagtaat------aagaggctccctgttag |
7834506 |
T |
|
| Q |
521 |
aacagatagtttactgtaaatctgttgttttacaaataataataccatttcaatgatctgtg |
582 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
7834507 |
aacagatagtttaccgtgaatc---tgttttacaaataataatatcatttcagtgatctgtg |
7834565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 64 - 284
Target Start/End: Complemental strand, 7880440 - 7880221
Alignment:
| Q |
64 |
tgatactaccaacatgttttctctacatgttcttgattggcttatggaactatcggtttcgtccgagacaaccacctcacatggatactaaactctcatg |
163 |
Q |
| |
|
||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
7880440 |
tgatactaccaacatttttcctctgcatgttcttgactggcttatggaactatcggtttcgtctgagacaaccgcctcacatggata-taaactctcatg |
7880342 |
T |
|
| Q |
164 |
ggcagagtctgttcatccagatgaacttgacgaagagtttgacacatttccaacatcaaggtcacatgatgcagtgagaatgaggtacgatagacttaga |
263 |
Q |
| |
|
| | || ||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
7880341 |
gcctgaatctagtcatcctgatgaacttgacgaagagtttgacacatttccaacatcaagatcacatgatgcagtgagaatgaggtatgatagacttaaa |
7880242 |
T |
|
| Q |
264 |
accgttgcaggtaggattcaa |
284 |
Q |
| |
|
|||||||||| |||||||||| |
|
|
| T |
7880241 |
accgttgcagataggattcaa |
7880221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 17 - 256
Target Start/End: Complemental strand, 7833035 - 7832795
Alignment:
| Q |
17 |
aatactagttcacatcctctttttgatattggtatggtatccagaattgatactaccaacatgtt-ttctctacatgttcttgattggcttatggaacta |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | |||||| ||||||||||||||||| | || ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
7833035 |
aatactagttcacatcctctttttgatacttgtgtagtatcctgaattgatactaccaactttttcttctctacaagttcttcattggcttatggaacta |
7832936 |
T |
|
| Q |
116 |
tcggtttcgtccgagacaaccacctcacatggatactaaactctcatgggcagagtctgttcatccagatgaacttgacgaagagtttgacacatttcca |
215 |
Q |
| |
|
||||||| |||| |||| ||| | ||||||| ||||||||||||||||| || | ||||||||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
7832935 |
tcggttttgtcctccacaatcactttacatggagactaaactctcatgggctgaatatgttcatcctgatgaacttgataaagtgtttgacacatttcca |
7832836 |
T |
|
| Q |
216 |
acatcaaggtcacatgatgcagtgagaatgaggtacgatag |
256 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||| ||||| |
|
|
| T |
7832835 |
acatcaagatcacatgatatggtgagaatgaggtatgatag |
7832795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 364 - 462
Target Start/End: Complemental strand, 7880207 - 7880109
Alignment:
| Q |
364 |
tgtttgtgttgtttagcctttgtgcagctgtgattttctatgcaacatcatttagagttgtggttttggtgacaggtttgtataatttgagacatccaa |
462 |
Q |
| |
|
|||||||||||||||| ||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7880207 |
tgtttgtgttgtttagtctttgtgaagttgtgattttctatgcaactccatttagagttgtggttttggtgacaggtttgtataatttaagacatccaa |
7880109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 424 - 546
Target Start/End: Complemental strand, 7832708 - 7832586
Alignment:
| Q |
424 |
tggttttggtgacaggtttgtataatttgagacatccaaagtttaggaacaaactaccttctgttccgagtaatttcttcaagaggctccctgctagaac |
523 |
Q |
| |
|
|||||||||||||| |||||||| |||||| |||| | | |||||||||||||||||||||||| || |||||||||||||||| ||||||| ||||||| |
|
|
| T |
7832708 |
tggttttggtgacaagtttgtatgatttgaaacatacgaggtttaggaacaaactaccttctgtaccaagtaatttcttcaagaagctcccttctagaac |
7832609 |
T |
|
| Q |
524 |
agatagtttactgtaaatctgtt |
546 |
Q |
| |
|
||| || ||||||||||| |||| |
|
|
| T |
7832608 |
agaaagcttactgtaaatttgtt |
7832586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 4e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 81 - 346
Target Start/End: Complemental strand, 8415668 - 8415403
Alignment:
| Q |
81 |
tttctctacatgttcttgattggcttatggaactatcggtttcgtccgagacaaccacctcacatggatactaaactctcatgggcagagtctgttcatc |
180 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||| |||||||| ||| | |||||||||||||||||||||||||||||||| || | | ||| |
|
|
| T |
8415668 |
tttctctacatgttcttaattggtttatggaactatcgatttcgtccaagaaatccacctcacatggatactaaactctcatgggccgaaggagctaatc |
8415569 |
T |
|
| Q |
181 |
cagatgaacttgacgaagagtttgacacatttccaacatcaaggtcacatgatgcagtgagaatgaggtacgatagacttagaaccgttgcaggtaggat |
280 |
Q |
| |
|
|||| ||||| || ||||||||||| |||||||||| || | | ||||||| |||||||||||||| ||||| ||||||| ||||| || ||||| |
|
|
| T |
8415568 |
cagacgaactcgatgaagagtttgatacatttccaagttctaaacctcatgatgtggtgagaatgaggtatgataggcttagaagtgttgcgggaaggat |
8415469 |
T |
|
| Q |
281 |
tcaaacaattgttggcgacatagctacacaaggggagaggtttatgtctctactgagctggagaga |
346 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
8415468 |
tcaaacggttgttggagacatagctacacaaggagagaggtttcattctctactgagctggagaga |
8415403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 3060 - 3015
Alignment:
| Q |
49 |
tatggtatccagaattgatactaccaacatgttttctctacatgtt |
94 |
Q |
| |
|
|||| |||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
3060 |
tatgttatccagaattgatcctaccaacaatttttctctacatgtt |
3015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University