View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6295_low_23 (Length: 285)

Name: NF6295_low_23
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6295_low_23
NF6295_low_23
[»] chr3 (16 HSPs)
chr3 (1-263)||(7335002-7335263)
chr3 (1-101)||(2491315-2491415)
chr3 (23-101)||(2659895-2659973)
chr3 (1-106)||(2474340-2474445)
chr3 (1-101)||(9562694-9562794)
chr3 (17-162)||(9566569-9566711)
chr3 (1-106)||(2475880-2475985)
chr3 (1-100)||(13497416-13497515)
chr3 (1-74)||(2501414-2501487)
chr3 (1-101)||(7325128-7325228)
chr3 (2-100)||(2630570-2630668)
chr3 (24-101)||(2645088-2645165)
chr3 (14-102)||(755376-755464)
chr3 (1-101)||(7443725-7443825)
chr3 (1-99)||(747856-747954)
chr3 (169-211)||(2474199-2474241)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-101)||(33889-33989)
[»] chr6 (1 HSPs)
chr6 (17-71)||(24418217-24418271)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 7335002 - 7335263
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7335002 agaattaaagaacttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 7335101  T
Q  101 tgggttgttccggtggttgtttctgccgttagtgacagagaagtaagaacgatgtcgtttgggttgtcctcatcgctaacgtgcgccatttctctacaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7335102 tgggttgttccggtggttgtttctgccgttagtgacagagaagtaagaacgatgtcgtttgggttgtcctcatcgctaacgtgcgccatttctctacaac 7335201  T
Q  201 aactaagtgaagctttgtttgagcgagtgaaggttccaaaattagggtttgagatctcaatcc 263  Q
    || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7335202 aattaagtgaagc-ttgtttgagcgagtgaaggttccaaaattagggtttgagatctcaatcc 7335263  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2491415 - 2491315
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 100  Q
    |||||| || || ||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  2491415 agaattgaaaaacttacaaaggcatcgaagctgtaccagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaaaggaagagttggaagc 2491316  T
Q  101 t 101  Q
    |    
T  2491315 t 2491315  T

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Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 101
Target Start/End: Original strand, 2659895 - 2659973
Alignment:
Q  23 catcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagct 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||  |||||||    
T  2659895 catcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggagatcaaaaggaagagctggaagct 2659973  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2474445 - 2474340
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 100  Q
    |||||||||||| |||||||| || |||||||||||  ||||||| || ||||||||||| |||||||||||||||| |||||| |||||||| |||||     
T  2474445 agaattaaagaacttacagaggcaccgaagctgtacaggtaatttgacgggaagcctacagagaatctcaggcaggagatcaaagggaagagtgggaagt 2474346  T
Q  101 tgggtt 106  Q
    ||||||    
T  2474345 tgggtt 2474340  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 9562694 - 9562794
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 100  Q
    |||||| ||||| | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| | |||||| |||||||| ||||||    
T  9562694 agaattgaagaactcacacagacatcgaagctgtacaagtaatttcaccggaagcctacagagaatttcaggcagaagatcaaaaggaagagttggaagc 9562793  T
Q  101 t 101  Q
    |    
T  9562794 t 9562794  T

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Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 9566569 - 9566711
Alignment:
Q  17 cagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagctgggttgttccggtgg 116  Q
    ||||| || ||||||||| ||||||||||||  ||||||||||| ||||||||||||| |||||| || ||||||||||||||||||    |||||||||    
T  9566569 cagaggcaccgaagctgtccgagtaatttcatgggaagcctacaaagaatctcaggcaagacatcgaagggaagagtaggaagctgg---attccggtgg 9566665  T
Q  117 ttgtttctgccgttagtgacagagaagtaagaacgatgtcgtttgg 162  Q
    ||||||| |||||   |||| || ||||||| |  |||||||||||    
T  9566666 ttgtttccgccgtgcatgactgacaagtaaggaatatgtcgtttgg 9566711  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2475985 - 2475880
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 100  Q
    |||||| || || ||||| || || |||||||||||||||||||| || || | |||| ||||||||||||||||||||||||| |||||||| ||||||    
T  2475985 agaattgaaaaacttacaaaggcaccgaagctgtacgagtaatttgacaggtaacctaaacagaatctcaggcaggacatcaaagggaagagtgggaagc 2475886  T
Q  101 tgggtt 106  Q
    ||||||    
T  2475885 tgggtt 2475880  T

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Target: chr3; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 13497515 - 13497416
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 100  Q
    ||||||||| || || ||||| |||||||| ||||| ||||| ||||||||||||||||| || ||||||||||||| |||||| ||||| |||||||||    
T  13497515 agaattaaaaaacttgcagaggcatcgaagttgtacaagtaacttcaccggaagcctacaaaggatctcaggcaggagatcaaatggaagtgtaggaagc 13497416  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 2501487 - 2501414
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggca 74  Q
    |||||| ||||| ||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  2501487 agaattgaagaacttacaaaggcatcgaagctgtactagtaatttcaccggaagcctgcacagaatctcaggca 2501414  T

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Target: chr3; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7325128 - 7325228
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 100  Q
    |||||| ||||| |||||||| || |||||||||| |||||||||||| |||||||| || ||||||||||| | |||||| || |||||||| ||||||    
T  7325128 agaattgaagaacttacagaggcaccgaagctgtatgagtaatttcacaggaagcctgcagagaatctcaggtaagacatcgaaaggaagagttggaagc 7325227  T
Q  101 t 101  Q
    |    
T  7325228 t 7325228  T

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Target: chr3; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 2 - 100
Target Start/End: Complemental strand, 2630668 - 2630570
Alignment:
Q  2 gaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 100  Q
    ||||| ||||| ||||| || || |||||||| ||||||||||||||||||||| |||| ||||| |||| ||| ||||||||||||||| | ||||||    
T  2630668 gaattgaagaacttacaaaggcaccgaagctgcacgagtaatttcaccggaagcatacagagaatgtcagtcagaacatcaaacggaagaatcggaagc 2630570  T

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Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 2645088 - 2645165
Alignment:
Q  24 atcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagct 101  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||||||| |||| |||||  |||||||| |||||||    
T  2645088 atcgaagctgtataagtaatttcaccggaagcctacaaagaatctcaggaaggagatcaacaggaagagttggaagct 2645165  T

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Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 102
Target Start/End: Original strand, 755376 - 755464
Alignment:
Q  14 ttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagctg 102  Q
    |||||||| || || |||||| |||||||||| |  ||||||||||| |||||||||||||||||||| |  |||||||||||||||||    
T  755376 ttacagaggcaccgcagctgtccgagtaatttgatgggaagcctacaaagaatctcaggcaggacatcgattggaagagtaggaagctg 755464  T

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Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 7443725 - 7443825
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 100  Q
    |||||| ||||| |||||||| || ||||| |||| |||||||||||| |||||||| || ||||||||||| |||| ||| || |||||||| ||||||    
T  7443725 agaattgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggaggagatcgaagggaagagtgggaagc 7443824  T
Q  101 t 101  Q
    |    
T  7443825 t 7443825  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 747856 - 747954
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaag 99  Q
    ||||| ||| || |||||||| |||||||| |||||||||||||| |  ||||||||||  |||| |||||| |  ||||| || |||||||| |||||    
T  747856 agaataaaaaaacttacagaggcatcgaagttgtacgagtaatttgatgggaagcctaccgagaaactcagggaaaacatcgaatggaagagtgggaag 747954  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 2474241 - 2474199
Alignment:
Q  169 ctcatcgctaacgtgcgccatttctctacaacaactaagtgaa 211  Q
    ||||||| |||| |||||||||||| |||||||||||||||||    
T  2474241 ctcatcgttaacctgcgccatttctatacaacaactaagtgaa 2474199  T

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Target: scaffold0097 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 33989 - 33889
Alignment:
Q  1 agaattaaagaatttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcaggcaggacatcaaacggaagagtaggaagc 100  Q
    ||||| |||||| |||||||| ||||| || |||| ||||||||| |||||||||||||| ||||||||||| | || |||||| |||||||| ||||||    
T  33989 agaatcaaagaacttacagaggcatcggagttgtatgagtaatttgaccggaagcctacatagaatctcaggtatgagatcaaaaggaagagttggaagc 33890  T
Q  101 t 101  Q
    |    
T  33889 t 33889  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 24418217 - 24418271
Alignment:
Q  17 cagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcag 71  Q
    |||||||| ||||| || | |||||| ||||| ||||||||||||||||||||||    
T  24418217 cagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcag 24418271  T

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