View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6295_low_3 (Length: 575)

Name: NF6295_low_3
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6295_low_3
NF6295_low_3
[»] chr2 (3 HSPs)
chr2 (191-565)||(21427166-21427539)
chr2 (1-198)||(21426896-21427093)
chr2 (95-155)||(29351009-29351069)
[»] scaffold1051 (1 HSPs)
scaffold1051 (250-332)||(1824-1906)
[»] chr4 (3 HSPs)
chr4 (96-153)||(45371487-45371544)
chr4 (97-156)||(48863848-48863907)
chr4 (91-156)||(45365633-45365698)
[»] chr7 (1 HSPs)
chr7 (97-155)||(30130679-30130737)
[»] chr8 (3 HSPs)
chr8 (91-125)||(12195901-12195935)
chr8 (91-125)||(12440329-12440363)
chr8 (94-155)||(4030202-4030263)
[»] chr1 (2 HSPs)
chr1 (91-153)||(24340994-24341056)
chr1 (91-153)||(24353359-24353421)
[»] chr5 (1 HSPs)
chr5 (99-156)||(9120354-9120411)


Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 191 - 565
Target Start/End: Original strand, 21427166 - 21427539
Alignment:
Q  191 tgaaacatgagtggtgataggcaaaatagtgagactgcaacatcaaaaatagatttgagagtaaagttgtcaggtgaacatcatcttcaacttatttcat 290  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||    
T  21427166 tgaaacatgagtggtgataggcaaaatagtgaaactgcaacatcaaaaatagatttgagagtaaagttgtcacatgaacatcatcttcaacttattccat 21427265  T
Q  291 catttatgttttatcttttacagtatttaatatgctattgtttgtgttaatattaatcaattcgttttcttcgatagttcccactccgtaataatgtgtt 390  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  21427266 catttatgttttatcttttacagtatttaatatgctattgtttgtgttaatattaagcaattcgttttcttcgatcgttcccactccgtaataatgtgtt 21427365  T
Q  391 tccttcctttcttctattgggattttttggttgaagacatgattcnnnnnnnnntgttgcattgcataatgatatggagtcaatttttaagctgtgaaaa 490  Q
    ||||||||||||||||||||||||||||||| |||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||    
T  21427366 tccttcctttcttctattgggattttttggtggaagacatgattc-aaaaaaaatgttgcattgcataatgatatggagtcaatttttaagctgtgaaaa 21427464  T
Q  491 tcagttgacgatgggtactattatgcgaaacggatgccatgttattgcatgtgatgtttaatttagcctatgata 565  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21427465 tcagttgacgatgggtactattatgcgaaacggatgccatgttattgcatgtgatgtttaatttagcctatgata 21427539  T

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Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 21426896 - 21427093
Alignment:
Q  1 caaattataatggaaatggattgaagaagttcaacgacaaaggacagctgctagagcatcaattctattcatcatcgtataaaaagaacatggccatgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  21426896 caaattataatggaaatggattgaagaagttcaacgacaaaggacagctgctagagcatcaattctattcatcatcgtataaaaagaacgtggccatgta 21426995  T
Q  101 tacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgacaagtgtggtgataacaaataaaaagaatgttattgtgaaacat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21426996 tacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgacaagtgtggtgataacaaataaaaagaatgttattgtgaaacat 21427093  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 29351009 - 29351069
Alignment:
Q  95 catgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgac 155  Q
    |||||| | |||||||||||||||||||||  | | || ||| ||||||||||||||||||    
T  29351009 catgtacagagagtctatgctttcactccccggtgacaatgagcaagcttaagaagatgac 29351069  T

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Target: scaffold1051 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 1906 - 1824
Alignment:
Q  250 agtaaagttgtcaggtgaacatcatcttcaacttatttcatcatttatgttttatcttttacagtatttaatatgctattgtt 332  Q
    |||||||||||||  | ||| ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  1906 agtaaagttgtcatattaacttcatctttaacttatttcatcatttatgttttatcttttacattattttatatgttattgtt 1824  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 45371544 - 45371487
Alignment:
Q  96 atgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatg 153  Q
    ||||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||    
T  45371544 atgtatacagagtctctgctttcactctctagcgacaatgatcaagcttaagaagatg 45371487  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 48863848 - 48863907
Alignment:
Q  97 tgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgaca 156  Q
    |||||||||||||| |||||||||||||||  | || ||| |||||||||||||||||||    
T  48863848 tgtatacagagtctctgctttcactccctaatgacagtgagcaagcttaagaagatgaca 48863907  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 45365698 - 45365633
Alignment:
Q  91 tggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgaca 156  Q
    |||||||||||||||||||| |||| ||||| ||| | | || ||| |||||||||||||||||||    
T  45365698 tggccatgtatacagagtctttgctgtcacttcctggtgacaatgagcaagcttaagaagatgaca 45365633  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 30130737 - 30130679
Alignment:
Q  97 tgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgac 155  Q
    |||||||||||||| | |||||| |||||||||||| |||| |||||||||||||||||    
T  30130737 tgtatacagagtctcttctttcattccctagcggcactgatgaagcttaagaagatgac 30130679  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 12195901 - 12195935
Alignment:
Q  91 tggccatgtatacagagtctatgctttcactccct 125  Q
    |||||||||||||||||||| ||||||||||||||    
T  12195901 tggccatgtatacagagtctctgctttcactccct 12195935  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 125
Target Start/End: Original strand, 12440329 - 12440363
Alignment:
Q  91 tggccatgtatacagagtctatgctttcactccct 125  Q
    |||||||||||||||||||| ||||||||||||||    
T  12440329 tggccatgtatacagagtctctgctttcactccct 12440363  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 4030263 - 4030202
Alignment:
Q  94 ccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgac 155  Q
    ||||||| ||||||||| |||||||||||||| |   || ||| ||||||||||||||||||    
T  4030263 ccatgtacacagagtctctgctttcactccctggtaacaatgagcaagcttaagaagatgac 4030202  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 24340994 - 24341056
Alignment:
Q  91 tggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatg 153  Q
    |||| |||||||| |||||| |||||||||||||||| | || |||  |||||||||||||||    
T  24340994 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatg 24341056  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 24353359 - 24353421
Alignment:
Q  91 tggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatg 153  Q
    |||| |||||||| |||||| |||||||||||||||| | || |||  |||||||||||||||    
T  24353359 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatg 24353421  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 9120354 - 9120411
Alignment:
Q  99 tatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgaca 156  Q
    |||||||||||| |||||||||||||| | | || ||| |||||||||| ||||||||    
T  9120354 tatacagagtctctgctttcactccctggtgacaatgaacaagcttaaggagatgaca 9120411  T

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