View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6295_low_33 (Length: 251)
Name: NF6295_low_33
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 246
Target Start/End: Original strand, 28725373 - 28725612
Alignment:
| Q |
3 |
atattattattatcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28725373 |
atattattattatcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagtaatcttattttc |
28725472 |
T |
|
| Q |
103 |
tggtgaagatatatggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaact |
202 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28725473 |
tggtgaagat----ggcttactttgtagaattaattgcttgcttcttttagatttagaataatcgattagtatttgaggttattctaatatggaggaact |
28725568 |
T |
|
| Q |
203 |
taaatgtaagcattgtctctatatttgtttagtttcttctcact |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28725569 |
taaatgtaagcattgtctctatatttgtttagtttcttgtcact |
28725612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 28727870 - 28728005
Alignment:
| Q |
12 |
ttatcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaagt-aatcttattttctggtgaag |
110 |
Q |
| |
|
|||||||||| |||||| |||||||||||| |||||||| ||||||| |||||||||||||||| ||||| ||||| | |||||||||| ||| ||||| |
|
|
| T |
28727870 |
ttatcaggtgagtcaatcatcttcaactca--aactatctccaacatctttgaatggagacgatgattgtttaacaatttaatcttatttactgttgaag |
28727967 |
T |
|
| Q |
111 |
atatatggcttactttgtagaattaattgcttgcttctttta |
152 |
Q |
| |
|
|| |||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
28727968 |
at----ggcttactttatagaattaattacttgcttctttta |
28728005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 28734084 - 28734221
Alignment:
| Q |
12 |
ttatcaggtgggtcaattatcttcaactcattaactatctacaacatcattgaatggagacgatgtttgttcaacaa-gtaatcttattttctggtgaag |
110 |
Q |
| |
|
|||||||||| |||||| ||||||| |||| ||||||||||| ||| ||||||||||||||||| ||||| ||||| ||||||||||| ||| ||||| |
|
|
| T |
28734084 |
ttatcaggtgagtcaatcatcttcagctca--aactatctacagcattattgaatggagacgatgattgtttaacaatttaatcttatttactgttgaag |
28734181 |
T |
|
| Q |
111 |
atatatggcttac--tttgtagaattaattgcttgcttctttta |
152 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
28734182 |
----atggcttactttttatagaattaattacttgcttctttta |
28734221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University