View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_low_34 (Length: 251)
Name: NF6295_low_34
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 45394151 - 45394387
Alignment:
| Q |
1 |
ctttgaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaac |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45394151 |
ctttgaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgcccaaaacagtagagtttgtcaccaggggaaaac |
45394250 |
T |
|
| Q |
101 |
acaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45394251 |
acaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaat |
45394350 |
T |
|
| Q |
201 |
ctttctcaaccttcttgatctcaatcttctggcgccc |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
45394351 |
ctttctcaaccttcttgatctcaatcttctggcgccc |
45394387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 52740762 - 52740991
Alignment:
| Q |
1 |
ctttgaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||| | |||||||||||||| |||||| |
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| T |
52740762 |
ctttgaatcctcaaactcagtggttcctttgatgtagctgttgaggacagagtatgtgtcgggttggccaaaacaaaatagtttgtcaccaggagaaaac |
52740861 |
T |
|
| Q |
101 |
acaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| | || | |
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| T |
52740862 |
acaatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtcacttgtttctgtgatt |
52740961 |
T |
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| Q |
201 |
ctttctcaaccttcttgatctcaatcttct |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
52740962 |
ctttctcaaccttcttgatctcaatcttct |
52740991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 13539369 - 13539603
Alignment:
| Q |
5 |
gaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaa |
104 |
Q |
| |
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||||||||||||||||||||| | |||||||||||||| || | || ||| |||||||||||| || | |||||||| ||||||||||| | |
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| T |
13539369 |
gaatcctcaaactcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacacca |
13539468 |
T |
|
| Q |
105 |
tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatcttt |
204 |
Q |
| |
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|||||| |||| | |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| ||||| || |||| || |||| |
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| T |
13539469 |
ccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgcttt |
13539568 |
T |
|
| Q |
205 |
ctcaaccttcttgatctcaatcttctggcgcccta |
239 |
Q |
| |
|
|||| |||||||||||| ||||||| | |||||| |
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| T |
13539569 |
gtcaatcttcttgatctcgatcttcttgtgcccta |
13539603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 228
Target Start/End: Complemental strand, 35782198 - 35781972
Alignment:
| Q |
2 |
tttgaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaaca |
101 |
Q |
| |
|
|||||| | ||||||||| ||||||| |||||||||||||| |||| || |||| |||| ||| ||||||| |||||| || |||| ||||||| |
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| T |
35782198 |
tttgaaacatcaaactcaatggttccattgatgtagctattaaggatttggtcggtgtttggttcaccgaaacagtgtagtttgccagcaggagaaaaca |
35782099 |
T |
|
| Q |
102 |
caatgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatc |
201 |
Q |
| |
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| |||||||||||||||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||||||||||||| | ||||||| || |
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| T |
35782098 |
cgatgatggctgcatgaacatcacataaagtgcaaagttcactcgcttttcggaataaaccttgtcttctttttgagaaagtgacttgcttgttggtttc |
35781999 |
T |
|
| Q |
202 |
tttctcaaccttcttgatctcaatctt |
228 |
Q |
| |
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||| |||| ||| |||||||||||||| |
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| T |
35781998 |
tttttcaagctttttgatctcaatctt |
35781972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 9668345 - 9668579
Alignment:
| Q |
5 |
gaatcctcaaactcagtggttcctttgatgtagctattgaggacaacgttagtgtcgggttgaccaaaacagtagagtttgtcaccaggggaaaacacaa |
104 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||| || | || ||| |||||||||||| || | |||||||| ||||||||||| | |
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| T |
9668345 |
gaatcctcaaactcagtggtttcgttgatgtagctattaagaattgtgtcgatgttgggttgaccaaagcaaaatagtttgtcggacggggaaaacacca |
9668444 |
T |
|
| Q |
105 |
tgatggctgcatgaacatcacataagacacaaagttcgcttgcttttctgaataaaccttgtcttctttttgagaaagtgacaagtttgttggaatcttt |
204 |
Q |
| |
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|||||| |||| | |||||||||||||||||||| ||||||||| |||||| ||||||||||| |||||||| ||||| || |||| || |||| |
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| T |
9668445 |
ccatggctacatgtgcgtcacataagacacaaagttcacttgcttttttgaatagaccttgtcttcgctttgagaatgtgacttgtctgttcgatgcttt |
9668544 |
T |
|
| Q |
205 |
ctcaaccttcttgatctcaatcttctggcgcccta |
239 |
Q |
| |
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|||| |||||||||||| ||||||| | |||||| |
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| T |
9668545 |
gtcaatcttcttgatctcgatcttcttgtgcccta |
9668579 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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