View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6295_low_6 (Length: 455)

Name: NF6295_low_6
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6295_low_6
NF6295_low_6
[»] chr2 (2 HSPs)
chr2 (13-439)||(21426490-21426919)
chr2 (367-439)||(21430186-21430257)
[»] chr7 (10 HSPs)
chr7 (31-351)||(30130858-30131178)
chr7 (223-351)||(30125096-30125224)
chr7 (234-343)||(30120061-30120170)
chr7 (223-351)||(30165657-30165785)
chr7 (223-324)||(28180977-28181078)
chr7 (89-140)||(30165853-30165904)
chr7 (380-439)||(30131210-30131269)
chr7 (274-336)||(28180369-28180431)
chr7 (378-439)||(30120205-30120266)
chr7 (379-439)||(30125252-30125312)
[»] chr8 (4 HSPs)
chr8 (223-439)||(43164820-43165036)
chr8 (226-439)||(41311145-41311358)
chr8 (90-140)||(43164690-43164740)
chr8 (89-140)||(41311011-41311062)
[»] scaffold1051 (1 HSPs)
scaffold1051 (381-439)||(1971-2029)
[»] chr5 (1 HSPs)
chr5 (378-439)||(29261370-29261431)


Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 21426919 - 21426490
Alignment:
Q  13 tcaatccatttccattataatttgtaaagcatgtta---gggaaaaatcattggcttgaggagcgggatgcatataaaaagtccaagatgaatggacagc 109  Q
    ||||||||||||||||||||||||||||||||||||   ||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||    
T  21426919 tcaatccatttccattataatttgtaaagcatgttattagggaaaaatcattgtgttgaggagcggaatgcatataaaaagtccaagatgaatggacagc 21426820  T
Q  110 gtattcttgcatcatccatatcttaactgtaaccctatttgcaacccatacaccgataagcccgttaagtaccaacacatcaaattctaaacgagaagcn 209  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21426819 gtattcttgcatcatccatatcttaattgtaaccctatttgcaacccatacaccgataagcccgttaagtaccaacacatcaaattctaaacgagaagca 21426720  T
Q  210 nnnnnnntattataatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctcagaattatgaa 309  Q
           ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21426719 taaagaatattataatcatctggaagagctatctctgacattgttgtttcctttaaatcaagggcaataataacatcccggttggtctcagaattatgaa 21426620  T
Q  310 ccagccaatgaatagccccatttaagaacgacccgactctggactgaaattcatagacatcagtaatgatataaggcaaatgagaagcaacctcaatttg 409  Q
    |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21426619 ccagccaatgaatagccccatttaagaacgacccgactctgggccgaaattcatagacatcagtaatgatataaggcaaatgagaagcaacctcaatttg 21426520  T
Q  410 tttccatttatgagctctcaatgagaaaat 439  Q
    ||||||||||||||||||||||||||||||    
T  21426519 tttccatttatgagctctcaatgagaaaat 21426490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 367 - 439
Target Start/End: Complemental strand, 21430257 - 21430186
Alignment:
Q  367 catcagtaatgatataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaat 439  Q
    |||| |||| || ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||    
T  21430257 catcggtaaggacataaggcaaatgagaagcaacctcaattt-tttccattgattagctctcaatgagaaaat 21430186  T

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Target: chr7 (Bit Score: 125; Significance: 3e-64; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 31 - 351
Target Start/End: Original strand, 30130858 - 30131178
Alignment:
Q  31 aatttgtaaagcatgttagggaaaaatcattggcttgaggagcgggatgcatataaaaagtccaagatgaatggacagcgtattcttgcatcatccatat 130  Q
    ||||||||||| || |||||||||||| |||| |||||||||| ||||||||| | ||||||||||||||||| || | |||||||||||||| ||||||    
T  30130858 aatttgtaaaggatattagggaaaaatgattgtcttgaggagccggatgcatagagaaagtccaagatgaatgcactgtgtattcttgcatcacccatat 30130957  T
Q  131 cttaactgtaaccctatttgcaacccatacaccgataagcccgttaagtaccaacacatcaaattctaaacgagaagcnnnnnnnntattataatcatct 230  Q
    ||||||||||||   || || |||||||||||  || || || ||||||||||| | |||||| |||| | ||||| |        ||| | |||||| |    
T  30130958 cttaactgtaacaacatctgaaacccatacactaattagtccattaagtaccaatatatcaaaatctagaggagaaacataccaaatatcaaaatcattt 30131057  T
Q  231 ggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagccccat 330  Q
    ||||||| |||||||||||||||  ||||||||||||||| ||| |||||||||||||   | |||||| |||||| |||||||||||||||||||||||    
T  30131058 ggaagagttatctctgacattgtcatttcctttaaattaaaggctataataacatcccttcttgtctcataattataaaccagccaatgaatagccccat 30131157  T
Q  331 ttaagaacgacccgactctgg 351  Q
    | |||||| ||||||||||||    
T  30131158 tcaagaacaacccgactctgg 30131178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 223 - 351
Target Start/End: Original strand, 30125096 - 30125224
Alignment:
Q  223 aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaat 322  Q
    |||||| |||||||||||| ||||||||||| | ||||||||||| || ||||| ||||||||||  ||||||||||  |||||||||||||||||||||    
T  30125096 aatcatttggaagagctatttctgacattgtcgcttcctttaaatcaaaggcaacaataacatccttgttggtctcatgattatgaaccagccaatgaat 30125195  T
Q  323 agccccatttaagaacgacccgactctgg 351  Q
    || |||||| |||||| |||| |||||||    
T  30125196 agtcccattcaagaacaacccaactctgg 30125224  T

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Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 234 - 343
Target Start/End: Original strand, 30120061 - 30120170
Alignment:
Q  234 agagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagccccattta 333  Q
    |||||||||||||| ||||| ||||||||||||| || |||||||||||||| |  ||||||||||  ||||||||||| |||||||||||||||||| |    
T  30120061 agagctatctctgatattgtcgtttcctttaaatcaaaggcaataataacattcatgttggtctcatgattatgaaccacccaatgaatagccccattca 30120160  T
Q  334 agaacgaccc 343  Q
    ||||| ||||    
T  30120161 agaacaaccc 30120170  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 351
Target Start/End: Complemental strand, 30165785 - 30165657
Alignment:
Q  223 aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaat 322  Q
    |||||| ||||||||||||||||| |||||| | ||||||||||| || ||||||||||||||||   |  |||| | |||||| |||||||||||||||    
T  30165785 aatcatttggaagagctatctctgccattgtcgcttcctttaaatcaaaggcaataataacatccatttcagtctgataattataaaccagccaatgaat 30165686  T
Q  323 agccccatttaagaacgacccgactctgg 351  Q
    ||  ||||| ||||||||||| |||||||    
T  30165685 agaaccattgaagaacgacccaactctgg 30165657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 223 - 324
Target Start/End: Original strand, 28180977 - 28181078
Alignment:
Q  223 aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaat 322  Q
    ||||||||||||||||||| |||||||||||  |||||||||||| || ||||||||||||| |    ||||||||| |||||| |||||||||||||||    
T  28180977 aatcatctggaagagctatatctgacattgtcatttcctttaaatcaaaggcaataataacaccaattttggtctcataattataaaccagccaatgaat 28181076  T
Q  323 ag 324  Q
    ||    
T  28181077 ag 28181078  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 30165904 - 30165853
Alignment:
Q  89 agtccaagatgaatggacagcgtattcttgcatcatccatatcttaactgta 140  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||||||    
T  30165904 agtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 30165853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 380 - 439
Target Start/End: Original strand, 30131210 - 30131269
Alignment:
Q  380 ataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaat 439  Q
    ||||||||||||||||||||||| ||||||||| ||  ||  ||||||||||||||||||    
T  30131210 ataaggcaaatgagaagcaacctgaatttgttttcagctaatagctctcaatgagaaaat 30131269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 274 - 336
Target Start/End: Original strand, 28180369 - 28180431
Alignment:
Q  274 caataataacatcccggttggtctcagaattatgaaccagccaatgaatagccccatttaaga 336  Q
    |||||||||||| ||  |||||||||  ||||||||||| ||||||||||||||| |||||||    
T  28180369 caataataacattcctcttggtctcatgattatgaaccaaccaatgaatagccccgtttaaga 28180431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 378 - 439
Target Start/End: Original strand, 30120205 - 30120266
Alignment:
Q  378 atataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaat 439  Q
    |||||||| |||||| || ||||||||| ||||||||| |||| || |||||||||||||||    
T  30120205 atataaggtaaatgaaaaccaacctcaacttgtttccacttattagttctcaatgagaaaat 30120266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 439
Target Start/End: Original strand, 30125252 - 30125312
Alignment:
Q  379 tataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaat 439  Q
    ||||||||||||||||| ||| ||||||||  | ||| |||| ||||||||||| ||||||    
T  30125252 tataaggcaaatgagaatcaaactcaatttcctcccacttattagctctcaatgggaaaat 30125312  T

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Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 223 - 439
Target Start/End: Original strand, 43164820 - 43165036
Alignment:
Q  223 aatcatctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaat 322  Q
    |||||||||||||||| ||||||||||||||  |||||||||||| |  |||||||||||||||    |  |||||| |||||| |||||||||||||||    
T  43164820 aatcatctggaagagcaatctctgacattgtcttttcctttaaatcataggcaataataacatctatttcagtctcataattataaaccagccaatgaat 43164919  T
Q  323 agccccatttaagaacgacccgactctggactgaaattcatagacatcagtaatgatataaggcaaatgagaagcaacctcaatttgtttccatttatga 422  Q
    ||  ||||| |||||||||||||||||||    |  ||||      |||||| |   ||||||||||| |||| ||| ||||||||||| ||||| || |    
T  43164920 agaaccattcaagaacgacccgactctgggagcaccttcaggtctttcagtattccaataaggcaaatcagaatcaaactcaatttgttcccattcatta 43165019  T
Q  423 gctctcaatgagaaaat 439  Q
    |||||||||||||||||    
T  43165020 gctctcaatgagaaaat 43165036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 439
Target Start/End: Original strand, 41311145 - 41311358
Alignment:
Q  226 catctggaagagctatctctgacattgttgtttcctttaaattaagggcaataataacatcccggttggtctcagaattatgaaccagccaatgaatagc 325  Q
    ||||||| |||||  ||||||||| |||  |||||||||||| || ||||||||||||||||   |  |||| |  || || |||||||||||||||||     
T  41311145 catctgggagagcagtctctgacagtgtcatttcctttaaatcaaaggcaataataacatccatttcagtcttatcatcataaaccagccaatgaataga 41311244  T
Q  326 cccatttaagaacgacccgactctgg-actgaaattcatagacatcagtaatgatataaggcaaatgagaagcaacctcaatttgtttccatttatgagc 424  Q
     ||||| ||||||||||| ||||||| ||    ||| | ||    ||||| |  |||||||||||| |||| ||| ||||||||||| ||||| || | |    
T  41311245 accattcaagaacgacccaactctgggaccaccatt-agagcttgcagtattcttataaggcaaatcagaatcaaactcaatttgttcccattgattacc 41311343  T
Q  425 tctcaatgagaaaat 439  Q
    |||||||||||||||    
T  41311344 tctcaatgagaaaat 41311358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 43164690 - 43164740
Alignment:
Q  90 gtccaagatgaatggacagcgtattcttgcatcatccatatcttaactgta 140  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||| ||||    
T  43164690 gtccaagatgaatgcacagcgtattcttgcattacccatatcttaagtgta 43164740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 41311011 - 41311062
Alignment:
Q  89 agtccaagatgaatggacagcgtattcttgcatcatccatatcttaactgta 140  Q
    ||||||||||||||| |  |||||||||||||||| ||||||||||| ||||    
T  41311011 agtccaagatgaatgtattgcgtattcttgcatcacccatatcttaagtgta 41311062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1051 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 439
Target Start/End: Original strand, 1971 - 2029
Alignment:
Q  381 taaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaat 439  Q
    ||||||||| ||||| ||| ||||||||||||||| |||| ||||||||||||||||||    
T  1971 taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaat 2029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 439
Target Start/End: Complemental strand, 29261431 - 29261370
Alignment:
Q  378 atataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaat 439  Q
    |||||||| |||||| || |||| |||| ||||||| | |||| ||||||||||||||||||    
T  29261431 atataaggtaaatgaaaaccaacatcaacttgtttctacttattagctctcaatgagaaaat 29261370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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