View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6295_low_7 (Length: 442)
Name: NF6295_low_7
Description: NF6295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6295_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 8467785 - 8467380
Alignment:
| Q |
18 |
atatcatggaatattaccttcatattcatcttctattatcaataaaggacatcatcattt-----------------aggaaacaaaaaacttgacttaa |
100 |
Q |
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| T |
8467785 |
atatcatggaatattaccttcatattcatcttctattatcaataaaggacatcatcatcttccttcatttcatatataggaaacaaaaaacttgacttaa |
8467686 |
T |
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| Q |
101 |
taatttgtttggtaaagtaaagaaaaatagaaaactaatttcccccaacctcgctgatctgatcaccatagatataatatgagcctcttctaatgtaaac |
200 |
Q |
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| T |
8467685 |
taatttgtttggtaaagtaaagaaaaatagaaaactaatttcccccaacctcgctgatctgatcaccatagatataagatgagcctcttctaatgtaaac |
8467586 |
T |
|
| Q |
201 |
ctagcctcatccaagaataaattactagaaaataaaggcatgggaaagtaggaaaacataaaccagctgctagctagggttttcatcaaacaagatggat |
300 |
Q |
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| T |
8467585 |
ctagcctcatccaagaataaattactagaaaataaaggcatgggaaagtaggaaaacataaaccagctgctagctagggttttcatcaaacaagatggat |
8467486 |
T |
|
| Q |
301 |
tatatgcatacaatggtgattgtatgaaataataaatgaattattaataaaatagaacaagctattttcacaaattaagctctgacactgcacacaagca |
400 |
Q |
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| T |
8467485 |
tatatgcatacaatggtgattgtatgaaataataaatgaattattaataaaatagaacaagctattttcacaaattaagctctgacactgcacacaacca |
8467386 |
T |
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| Q |
401 |
tactag |
406 |
Q |
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|||||| |
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| T |
8467385 |
tactag |
8467380 |
T |
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